Hb_132180_010

Information

Type -
Description -
Location Contig132180: 404-664
Sequence    

Annotation

kegg
ID rcu:RCOM_1620370
description SP1L, putative
nr
ID XP_011018777.1
description PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
swissprot
ID B3H4F1
description Protein SPIRAL1-like 1 OS=Arabidopsis thaliana GN=SP1L1 PE=2 SV=1
trembl
ID B9REC6
description SP1L, putative OS=Ricinus communis GN=RCOM_1620370 PE=4 SV=1
Gene Ontology
ID GO:0005874
description protein spiral1-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132180_010 0.0 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
2 Hb_002078_260 0.1010137713 - - unknown [Populus trichocarpa]
3 Hb_001233_020 0.1060952544 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
4 Hb_000671_120 0.1065178673 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
5 Hb_004669_030 0.1148568078 - - -
6 Hb_000635_070 0.115444952 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
7 Hb_001220_010 0.1157663817 - - hypothetical protein JCGZ_00411 [Jatropha curcas]
8 Hb_011214_100 0.1164062493 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
9 Hb_007894_230 0.1247247094 - - 30S ribosomal protein S14, putative [Ricinus communis]
10 Hb_025288_010 0.1249250342 - - PREDICTED: protein unc-50 homolog [Jatropha curcas]
11 Hb_005694_020 0.1267010275 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
12 Hb_098852_010 0.1291701638 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
13 Hb_030982_020 0.1291776532 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
14 Hb_000215_200 0.1294366191 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
15 Hb_041205_010 0.1301608751 - - conserved hypothetical protein [Ricinus communis]
16 Hb_029142_070 0.134465965 - - -
17 Hb_082006_010 0.1364184995 - - conserved hypothetical protein [Ricinus communis]
18 Hb_080601_020 0.1381205442 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
19 Hb_000125_020 0.1411765975 transcription factor TF Family: mTERF -
20 Hb_000340_520 0.1432682572 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]

Gene co-expression network

sample Hb_132180_010 Hb_132180_010 Hb_002078_260 Hb_002078_260 Hb_132180_010--Hb_002078_260 Hb_001233_020 Hb_001233_020 Hb_132180_010--Hb_001233_020 Hb_000671_120 Hb_000671_120 Hb_132180_010--Hb_000671_120 Hb_004669_030 Hb_004669_030 Hb_132180_010--Hb_004669_030 Hb_000635_070 Hb_000635_070 Hb_132180_010--Hb_000635_070 Hb_001220_010 Hb_001220_010 Hb_132180_010--Hb_001220_010 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_030982_020 Hb_030982_020 Hb_002078_260--Hb_030982_020 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_082006_010 Hb_082006_010 Hb_002078_260--Hb_082006_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_001233_020--Hb_001220_010 Hb_001233_020--Hb_004669_030 Hb_001233_020--Hb_000671_120 Hb_080601_020 Hb_080601_020 Hb_001233_020--Hb_080601_020 Hb_000994_110 Hb_000994_110 Hb_001233_020--Hb_000994_110 Hb_000671_120--Hb_004669_030 Hb_000671_120--Hb_001220_010 Hb_000342_160 Hb_000342_160 Hb_000671_120--Hb_000342_160 Hb_011037_020 Hb_011037_020 Hb_000671_120--Hb_011037_020 Hb_004669_030--Hb_000635_070 Hb_004669_030--Hb_001220_010 Hb_002562_110 Hb_002562_110 Hb_004669_030--Hb_002562_110 Hb_000635_070--Hb_082006_010 Hb_009270_030 Hb_009270_030 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_129672_010 Hb_129672_010 Hb_000635_070--Hb_129672_010 Hb_000635_070--Hb_002562_110 Hb_001220_010--Hb_080601_020 Hb_001220_010--Hb_007894_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
122.662 100.976 124.299 1701.55 111.816 1127.07
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
847.304 994.576 405.986 428.796 122.264

CAGE analysis