Hb_132259_010

Information

Type -
Description -
Location Contig132259: 16042-21182
Sequence    

Annotation

kegg
ID rcu:RCOM_0425800
description Auxin-induced protein 5NG4, putative
nr
ID XP_012075312.1
description PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
swissprot
ID Q9FGG3
description WAT1-related protein At5g64700 OS=Arabidopsis thaliana GN=At5g64700 PE=2 SV=1
trembl
ID A0A067KU01
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09478 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at5g64700-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09293: 16503-16916 , PASA_asmbl_09294: 20146-21145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132259_010 0.0 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
2 Hb_115114_010 0.06841814 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000015_230 0.0884489669 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
4 Hb_003073_040 0.10748746 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
5 Hb_004879_030 0.1131032529 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
6 Hb_000140_220 0.1139663171 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 22 [Jatropha curcas]
7 Hb_000032_590 0.1201968232 - - PREDICTED: glutaredoxin domain-containing cysteine-rich protein 1 [Jatropha curcas]
8 Hb_000813_090 0.1249900078 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]
9 Hb_003579_010 0.1262667419 - - cryptochrome 1.2 [Populus tremula]
10 Hb_044624_010 0.126988119 - - -
11 Hb_152414_010 0.1276764823 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
12 Hb_171900_110 0.1284133406 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT3-like [Populus euphratica]
13 Hb_006358_030 0.1318681183 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
14 Hb_001046_040 0.1326430705 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_026415_010 0.1368893573 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
16 Hb_009557_080 0.1386043792 - - PREDICTED: glutaredoxin-C9-like [Populus euphratica]
17 Hb_004324_220 0.1410874501 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
18 Hb_000325_070 0.141615851 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_009403_010 0.1432139829 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
20 Hb_005240_010 0.148320608 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]

Gene co-expression network

sample Hb_132259_010 Hb_132259_010 Hb_115114_010 Hb_115114_010 Hb_132259_010--Hb_115114_010 Hb_000015_230 Hb_000015_230 Hb_132259_010--Hb_000015_230 Hb_003073_040 Hb_003073_040 Hb_132259_010--Hb_003073_040 Hb_004879_030 Hb_004879_030 Hb_132259_010--Hb_004879_030 Hb_000140_220 Hb_000140_220 Hb_132259_010--Hb_000140_220 Hb_000032_590 Hb_000032_590 Hb_132259_010--Hb_000032_590 Hb_001046_040 Hb_001046_040 Hb_115114_010--Hb_001046_040 Hb_115114_010--Hb_004879_030 Hb_044624_010 Hb_044624_010 Hb_115114_010--Hb_044624_010 Hb_115114_010--Hb_000140_220 Hb_000813_090 Hb_000813_090 Hb_115114_010--Hb_000813_090 Hb_000015_230--Hb_115114_010 Hb_000325_070 Hb_000325_070 Hb_000015_230--Hb_000325_070 Hb_000015_230--Hb_003073_040 Hb_000015_230--Hb_000813_090 Hb_000015_230--Hb_000140_220 Hb_003073_040--Hb_000140_220 Hb_003073_040--Hb_115114_010 Hb_000270_250 Hb_000270_250 Hb_003073_040--Hb_000270_250 Hb_002030_100 Hb_002030_100 Hb_003073_040--Hb_002030_100 Hb_026415_010 Hb_026415_010 Hb_004879_030--Hb_026415_010 Hb_152414_010 Hb_152414_010 Hb_004879_030--Hb_152414_010 Hb_004879_030--Hb_000325_070 Hb_009557_080 Hb_009557_080 Hb_004879_030--Hb_009557_080 Hb_006358_030 Hb_006358_030 Hb_004879_030--Hb_006358_030 Hb_003579_010 Hb_003579_010 Hb_000140_220--Hb_003579_010 Hb_000140_220--Hb_009557_080 Hb_000049_290 Hb_000049_290 Hb_000140_220--Hb_000049_290 Hb_004324_220 Hb_004324_220 Hb_000140_220--Hb_004324_220 Hb_171900_110 Hb_171900_110 Hb_000032_590--Hb_171900_110 Hb_000032_590--Hb_006358_030 Hb_005240_010 Hb_005240_010 Hb_000032_590--Hb_005240_010 Hb_005772_020 Hb_005772_020 Hb_000032_590--Hb_005772_020 Hb_000032_590--Hb_115114_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.08432 1.66316 2.26174 0.0787015 0.0175491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.100813 3.98688

CAGE analysis