Hb_132517_010

Information

Type -
Description -
Location Contig132517: 543-2293
Sequence    

Annotation

kegg
ID pop:POPTR_0005s09980g
description hypothetical protein
nr
ID XP_011022106.1
description PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
swissprot
ID Q9SQ67
description NADPH-dependent codeinone reductase 1-4 OS=Papaver somniferum GN=COR1.4 PE=1 SV=2
trembl
ID B9H6T7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s09980g PE=4 SV=2
Gene Ontology
ID GO:0016491
description non-functional nadph-dependent codeinone reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132517_010 0.0 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
2 Hb_005389_090 0.0694639183 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
3 Hb_005396_110 0.0768183535 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001059_050 0.0874756834 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
5 Hb_001897_030 0.0886621892 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
6 Hb_151616_010 0.0952628926 - - -
7 Hb_001227_010 0.112139029 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
8 Hb_087468_010 0.112939049 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
9 Hb_021443_020 0.1132507861 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
10 Hb_000509_040 0.114863741 - - hypothetical protein VITISV_009716 [Vitis vinifera]
11 Hb_000286_210 0.1163101011 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
12 Hb_002639_120 0.1189211071 - - unnamed protein product [Vitis vinifera]
13 Hb_007313_050 0.1222147448 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
14 Hb_024357_010 0.1300451522 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
15 Hb_000111_150 0.1334801017 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
16 Hb_000991_110 0.1334889117 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
17 Hb_004195_030 0.13412303 - - hypothetical protein POPTR_0006s17880g, partial [Populus trichocarpa]
18 Hb_006573_060 0.1385106232 - - hypothetical protein [Bruguiera gymnorhiza]
19 Hb_001610_050 0.1441016178 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
20 Hb_001213_080 0.1462124224 - - PREDICTED: tubulin beta chain-like [Jatropha curcas]

Gene co-expression network

sample Hb_132517_010 Hb_132517_010 Hb_005389_090 Hb_005389_090 Hb_132517_010--Hb_005389_090 Hb_005396_110 Hb_005396_110 Hb_132517_010--Hb_005396_110 Hb_001059_050 Hb_001059_050 Hb_132517_010--Hb_001059_050 Hb_001897_030 Hb_001897_030 Hb_132517_010--Hb_001897_030 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_001227_010 Hb_001227_010 Hb_132517_010--Hb_001227_010 Hb_005389_090--Hb_001897_030 Hb_006573_060 Hb_006573_060 Hb_005389_090--Hb_006573_060 Hb_000991_110 Hb_000991_110 Hb_005389_090--Hb_000991_110 Hb_007313_050 Hb_007313_050 Hb_005389_090--Hb_007313_050 Hb_005389_090--Hb_005396_110 Hb_000509_040 Hb_000509_040 Hb_005396_110--Hb_000509_040 Hb_000111_150 Hb_000111_150 Hb_005396_110--Hb_000111_150 Hb_005396_110--Hb_001059_050 Hb_005396_110--Hb_001897_030 Hb_087468_010 Hb_087468_010 Hb_005396_110--Hb_087468_010 Hb_000286_210 Hb_000286_210 Hb_001059_050--Hb_000286_210 Hb_001059_050--Hb_151616_010 Hb_021443_020 Hb_021443_020 Hb_001059_050--Hb_021443_020 Hb_001213_080 Hb_001213_080 Hb_001059_050--Hb_001213_080 Hb_001059_050--Hb_007313_050 Hb_001897_030--Hb_000991_110 Hb_001897_030--Hb_000509_040 Hb_001897_030--Hb_087468_010 Hb_151616_010--Hb_000286_210 Hb_002639_120 Hb_002639_120 Hb_151616_010--Hb_002639_120 Hb_002422_010 Hb_002422_010 Hb_151616_010--Hb_002422_010 Hb_003012_010 Hb_003012_010 Hb_151616_010--Hb_003012_010 Hb_001227_010--Hb_002639_120 Hb_001227_010--Hb_021443_020 Hb_001227_010--Hb_151616_010 Hb_006890_050 Hb_006890_050 Hb_001227_010--Hb_006890_050 Hb_001610_050 Hb_001610_050 Hb_001227_010--Hb_001610_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26101 520.658 68.8471 400.862 3.02989 1.36419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.136662 58.5334 2.11733

CAGE analysis