Hb_132629_010

Information

Type -
Description -
Location Contig132629: 13-1045
Sequence    

Annotation

kegg
ID tcc:TCM_040352
description Gag protease polyprotein
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061GYZ5
description Gag protease polyprotein OS=Theobroma cacao GN=TCM_040352 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132629_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_075570_010 0.043103928 - - -
3 Hb_000007_310 0.06208734 - - hypothetical protein POPTR_0010s14370g [Populus trichocarpa]
4 Hb_177627_010 0.0643370179 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_003494_260 0.0811995001 - - -
6 Hb_000153_020 0.0970519201 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000153_040 0.0995814303 - - -
8 Hb_000345_480 0.1220359713 - - cyclin-dependent protein kinase, putative [Ricinus communis]
9 Hb_001604_110 0.1382276585 - - -
10 Hb_001892_160 0.1420945521 - - PREDICTED: MLP-like protein 28-like [Citrus sinensis]
11 Hb_005539_320 0.1464096332 - - PREDICTED: pumilio homolog 15-like [Vitis vinifera]
12 Hb_001178_120 0.1767898376 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
13 Hb_000094_390 0.1792137403 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
14 Hb_156144_020 0.1820372399 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
15 Hb_013983_010 0.1957902829 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
16 Hb_001741_100 0.197538203 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
17 Hb_171554_020 0.2043773293 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
18 Hb_002217_130 0.212821426 - - galactinol synthase-1 [Manihot esculenta]
19 Hb_182310_010 0.2136044655 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
20 Hb_067345_050 0.2273748347 - - PREDICTED: uncharacterized protein LOC104107076 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_132629_010 Hb_132629_010 Hb_075570_010 Hb_075570_010 Hb_132629_010--Hb_075570_010 Hb_000007_310 Hb_000007_310 Hb_132629_010--Hb_000007_310 Hb_177627_010 Hb_177627_010 Hb_132629_010--Hb_177627_010 Hb_003494_260 Hb_003494_260 Hb_132629_010--Hb_003494_260 Hb_000153_020 Hb_000153_020 Hb_132629_010--Hb_000153_020 Hb_000153_040 Hb_000153_040 Hb_132629_010--Hb_000153_040 Hb_075570_010--Hb_000007_310 Hb_075570_010--Hb_003494_260 Hb_075570_010--Hb_177627_010 Hb_075570_010--Hb_000153_040 Hb_000345_480 Hb_000345_480 Hb_075570_010--Hb_000345_480 Hb_000007_310--Hb_177627_010 Hb_000007_310--Hb_003494_260 Hb_000007_310--Hb_000153_020 Hb_000007_310--Hb_000153_040 Hb_001604_110 Hb_001604_110 Hb_177627_010--Hb_001604_110 Hb_005539_320 Hb_005539_320 Hb_177627_010--Hb_005539_320 Hb_177627_010--Hb_000153_020 Hb_003494_260--Hb_000345_480 Hb_003494_260--Hb_000153_040 Hb_013983_010 Hb_013983_010 Hb_003494_260--Hb_013983_010 Hb_000153_020--Hb_005539_320 Hb_001178_120 Hb_001178_120 Hb_000153_020--Hb_001178_120 Hb_000153_020--Hb_075570_010 Hb_000153_040--Hb_000345_480 Hb_000153_040--Hb_013983_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0293492 0 0 0 0.0235306 0.0206718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis