Hb_132697_010

Information

Type -
Description -
Location Contig132697: 2-798
Sequence    

Annotation

kegg
ID rcu:RCOM_1585590
description hypothetical protein
nr
ID XP_002510037.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4IBD7
description CSC1-like protein RXW8 OS=Arabidopsis thaliana GN=RXW8 PE=2 SV=1
trembl
ID B9R6U4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1585590 PE=4 SV=1
Gene Ontology
ID GO:0003824
description csc1-like protein rxw8 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09305: 41-498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132697_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_017987_020 0.0905538101 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000787_090 0.0924915114 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
4 Hb_002431_020 0.0951411532 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
5 Hb_075481_030 0.097854317 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
6 Hb_000933_020 0.0999288476 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000861_070 0.1017612345 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004724_320 0.1020125446 - - Vesicle-associated membrane protein, putative [Ricinus communis]
9 Hb_004128_050 0.106764304 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
10 Hb_000331_330 0.1077707225 - - PREDICTED: transcription factor GTE10 isoform X1 [Jatropha curcas]
11 Hb_032202_170 0.1086964271 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
12 Hb_000212_320 0.1096794434 - - PREDICTED: uncharacterized protein LOC105644891 [Jatropha curcas]
13 Hb_001502_060 0.1104014204 - - DNA mismatch repair protein MSH2, putative [Ricinus communis]
14 Hb_002499_070 0.1105935337 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
15 Hb_000521_260 0.1126344086 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
16 Hb_002400_470 0.1151916618 - - PREDICTED: calcium uptake protein 1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000365_140 0.1152863731 - - PREDICTED: ethanolamine-phosphate cytidylyltransferase [Jatropha curcas]
18 Hb_000072_350 0.1160524735 - - PREDICTED: WPP domain-interacting tail-anchored protein 1 [Jatropha curcas]
19 Hb_005489_080 0.1160954046 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007676_100 0.1172436069 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]

Gene co-expression network

sample Hb_132697_010 Hb_132697_010 Hb_017987_020 Hb_017987_020 Hb_132697_010--Hb_017987_020 Hb_000787_090 Hb_000787_090 Hb_132697_010--Hb_000787_090 Hb_002431_020 Hb_002431_020 Hb_132697_010--Hb_002431_020 Hb_075481_030 Hb_075481_030 Hb_132697_010--Hb_075481_030 Hb_000933_020 Hb_000933_020 Hb_132697_010--Hb_000933_020 Hb_000861_070 Hb_000861_070 Hb_132697_010--Hb_000861_070 Hb_006637_050 Hb_006637_050 Hb_017987_020--Hb_006637_050 Hb_000796_030 Hb_000796_030 Hb_017987_020--Hb_000796_030 Hb_183963_030 Hb_183963_030 Hb_017987_020--Hb_183963_030 Hb_002188_110 Hb_002188_110 Hb_017987_020--Hb_002188_110 Hb_010417_050 Hb_010417_050 Hb_017987_020--Hb_010417_050 Hb_000787_090--Hb_002431_020 Hb_001347_040 Hb_001347_040 Hb_000787_090--Hb_001347_040 Hb_004724_320 Hb_004724_320 Hb_000787_090--Hb_004724_320 Hb_001502_060 Hb_001502_060 Hb_000787_090--Hb_001502_060 Hb_000832_090 Hb_000832_090 Hb_000787_090--Hb_000832_090 Hb_002431_020--Hb_001502_060 Hb_001152_030 Hb_001152_030 Hb_002431_020--Hb_001152_030 Hb_000179_140 Hb_000179_140 Hb_002431_020--Hb_000179_140 Hb_002477_130 Hb_002477_130 Hb_002431_020--Hb_002477_130 Hb_000521_260 Hb_000521_260 Hb_075481_030--Hb_000521_260 Hb_004162_280 Hb_004162_280 Hb_075481_030--Hb_004162_280 Hb_005276_210 Hb_005276_210 Hb_075481_030--Hb_005276_210 Hb_075481_030--Hb_004724_320 Hb_075481_030--Hb_000861_070 Hb_000173_510 Hb_000173_510 Hb_075481_030--Hb_000173_510 Hb_003605_130 Hb_003605_130 Hb_000933_020--Hb_003605_130 Hb_000123_090 Hb_000123_090 Hb_000933_020--Hb_000123_090 Hb_008864_110 Hb_008864_110 Hb_000933_020--Hb_008864_110 Hb_007426_150 Hb_007426_150 Hb_000933_020--Hb_007426_150 Hb_000002_490 Hb_000002_490 Hb_000933_020--Hb_000002_490 Hb_001195_560 Hb_001195_560 Hb_000933_020--Hb_001195_560 Hb_000861_070--Hb_004724_320 Hb_002890_030 Hb_002890_030 Hb_000861_070--Hb_002890_030 Hb_000861_070--Hb_000521_260 Hb_000008_330 Hb_000008_330 Hb_000861_070--Hb_000008_330 Hb_000861_070--Hb_004162_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.498 20.6528 6.41905 16.4048 35.6362 20.6648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0736 13.3259 14.1383 8.57887 6.98735

CAGE analysis