Hb_132835_010

Information

Type -
Description -
Location Contig132835: 8605-13250
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24160g
description POPTRDRAFT_1093028; hypothetical protein
nr
ID XP_012089869.1
description PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SN27
description E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1
trembl
ID A0A067L976
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01516 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ring-h2 finger protein atl38-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09328: 8742-13480 , PASA_asmbl_09329: 10794-11208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132835_010 0.0 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
2 Hb_010655_010 0.077680767 - - Cycloartenol synthase, putative [Ricinus communis]
3 Hb_004440_090 0.0793893858 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
4 Hb_000069_110 0.0827196261 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
5 Hb_001703_030 0.0839664956 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
6 Hb_002609_020 0.0862925485 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
7 Hb_001975_140 0.0894983082 - - PREDICTED: urease accessory protein F [Jatropha curcas]
8 Hb_004109_090 0.0896125552 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_000046_280 0.089619649 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
10 Hb_000115_330 0.0915699729 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
11 Hb_021443_070 0.0939368725 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
12 Hb_004907_080 0.0945277791 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000358_150 0.0972645714 - - hypothetical protein VITISV_012309 [Vitis vinifera]
14 Hb_000243_030 0.0979445966 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
15 Hb_005194_010 0.0986028963 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
16 Hb_002006_020 0.0988169798 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
17 Hb_001632_040 0.0988533447 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
18 Hb_002506_020 0.1004393913 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
19 Hb_000342_130 0.1008889104 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
20 Hb_002477_070 0.1010502935 - - Charged multivesicular body protein 2a, putative [Ricinus communis]

Gene co-expression network

sample Hb_132835_010 Hb_132835_010 Hb_010655_010 Hb_010655_010 Hb_132835_010--Hb_010655_010 Hb_004440_090 Hb_004440_090 Hb_132835_010--Hb_004440_090 Hb_000069_110 Hb_000069_110 Hb_132835_010--Hb_000069_110 Hb_001703_030 Hb_001703_030 Hb_132835_010--Hb_001703_030 Hb_002609_020 Hb_002609_020 Hb_132835_010--Hb_002609_020 Hb_001975_140 Hb_001975_140 Hb_132835_010--Hb_001975_140 Hb_032264_110 Hb_032264_110 Hb_010655_010--Hb_032264_110 Hb_001090_040 Hb_001090_040 Hb_010655_010--Hb_001090_040 Hb_000451_010 Hb_000451_010 Hb_010655_010--Hb_000451_010 Hb_010655_010--Hb_004440_090 Hb_004907_080 Hb_004907_080 Hb_010655_010--Hb_004907_080 Hb_003005_020 Hb_003005_020 Hb_004440_090--Hb_003005_020 Hb_002391_300 Hb_002391_300 Hb_004440_090--Hb_002391_300 Hb_063716_050 Hb_063716_050 Hb_004440_090--Hb_063716_050 Hb_000046_280 Hb_000046_280 Hb_004440_090--Hb_000046_280 Hb_000398_180 Hb_000398_180 Hb_004440_090--Hb_000398_180 Hb_007426_230 Hb_007426_230 Hb_004440_090--Hb_007426_230 Hb_011867_010 Hb_011867_010 Hb_000069_110--Hb_011867_010 Hb_011316_040 Hb_011316_040 Hb_000069_110--Hb_011316_040 Hb_000069_110--Hb_002609_020 Hb_001277_330 Hb_001277_330 Hb_000069_110--Hb_001277_330 Hb_000510_320 Hb_000510_320 Hb_000069_110--Hb_000510_320 Hb_001703_030--Hb_000046_280 Hb_012799_180 Hb_012799_180 Hb_001703_030--Hb_012799_180 Hb_009838_080 Hb_009838_080 Hb_001703_030--Hb_009838_080 Hb_001703_030--Hb_011867_010 Hb_017904_010 Hb_017904_010 Hb_001703_030--Hb_017904_010 Hb_004735_040 Hb_004735_040 Hb_002609_020--Hb_004735_040 Hb_001821_010 Hb_001821_010 Hb_002609_020--Hb_001821_010 Hb_002609_020--Hb_009838_080 Hb_000056_200 Hb_000056_200 Hb_002609_020--Hb_000056_200 Hb_000243_030 Hb_000243_030 Hb_002609_020--Hb_000243_030 Hb_002226_070 Hb_002226_070 Hb_002609_020--Hb_002226_070 Hb_005489_110 Hb_005489_110 Hb_001975_140--Hb_005489_110 Hb_000173_290 Hb_000173_290 Hb_001975_140--Hb_000173_290 Hb_005194_010 Hb_005194_010 Hb_001975_140--Hb_005194_010 Hb_000342_130 Hb_000342_130 Hb_001975_140--Hb_000342_130 Hb_009658_020 Hb_009658_020 Hb_001975_140--Hb_009658_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.28805 3.08807 5.04324 5.36154 15.9297 10.5843
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.71075 11.633 12.6448 5.62517 4.93618

CAGE analysis