Hb_132840_050

Information

Type -
Description -
Location Contig132840: 35452-36865
Sequence    

Annotation

kegg
ID pxb:103956348
description protein CURVATURE THYLAKOID 1B, chloroplastic
nr
ID XP_012083090.1
description PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
swissprot
ID Q8LCA1
description Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana GN=CURT1B PE=1 SV=2
trembl
ID A0A067K802
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14176 PE=4 SV=1
Gene Ontology
ID GO:0009508
description protein curvature thylakoid chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09350: 35504-37106
cDNA
(Sanger)
(ID:Location)		 053_E16.ab1: 35675-37032

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_050 0.0 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
2 Hb_153106_010 0.0381239917 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
3 Hb_180007_010 0.0385498756 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_000243_190 0.0386837187 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
5 Hb_016334_010 0.0417105117 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
6 Hb_000251_160 0.0451927806 - - chlorophyll A/B binding protein, putative [Ricinus communis]
7 Hb_000825_010 0.0504176592 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
8 Hb_002374_480 0.0522459804 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_005483_050 0.0551574912 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001104_080 0.0575098021 - - peroxiredoxin, putative [Ricinus communis]
11 Hb_000029_150 0.0576145942 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004129_170 0.0588931449 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
13 Hb_000940_060 0.0637422728 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
14 Hb_013405_240 0.0650215261 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
15 Hb_000923_030 0.065059322 - - F-box family protein [Populus trichocarpa]
16 Hb_007416_250 0.0673653295 - - -
17 Hb_000762_050 0.0675656224 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
18 Hb_004116_030 0.0677127678 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
19 Hb_086022_020 0.069731527 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
20 Hb_000373_210 0.0715475429 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_132840_050 Hb_132840_050 Hb_153106_010 Hb_153106_010 Hb_132840_050--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_132840_050--Hb_180007_010 Hb_000243_190 Hb_000243_190 Hb_132840_050--Hb_000243_190 Hb_016334_010 Hb_016334_010 Hb_132840_050--Hb_016334_010 Hb_000251_160 Hb_000251_160 Hb_132840_050--Hb_000251_160 Hb_000825_010 Hb_000825_010 Hb_132840_050--Hb_000825_010 Hb_153106_010--Hb_180007_010 Hb_002374_480 Hb_002374_480 Hb_153106_010--Hb_002374_480 Hb_004129_170 Hb_004129_170 Hb_153106_010--Hb_004129_170 Hb_153106_010--Hb_000251_160 Hb_002890_170 Hb_002890_170 Hb_153106_010--Hb_002890_170 Hb_180007_010--Hb_002374_480 Hb_180007_010--Hb_000251_160 Hb_000373_210 Hb_000373_210 Hb_180007_010--Hb_000373_210 Hb_180007_010--Hb_004129_170 Hb_013405_240 Hb_013405_240 Hb_000243_190--Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_000243_190--Hb_007416_250 Hb_000940_060 Hb_000940_060 Hb_000243_190--Hb_000940_060 Hb_000243_190--Hb_016334_010 Hb_000029_150 Hb_000029_150 Hb_000243_190--Hb_000029_150 Hb_000762_050 Hb_000762_050 Hb_016334_010--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_016334_010--Hb_000003_530 Hb_004116_030 Hb_004116_030 Hb_016334_010--Hb_004116_030 Hb_008725_280 Hb_008725_280 Hb_016334_010--Hb_008725_280 Hb_000251_160--Hb_004129_170 Hb_086022_020 Hb_086022_020 Hb_000251_160--Hb_086022_020 Hb_000251_160--Hb_002374_480 Hb_001104_080 Hb_001104_080 Hb_000825_010--Hb_001104_080 Hb_000923_030 Hb_000923_030 Hb_000825_010--Hb_000923_030 Hb_000825_010--Hb_000251_160 Hb_007559_020 Hb_007559_020 Hb_000825_010--Hb_007559_020 Hb_005605_020 Hb_005605_020 Hb_000825_010--Hb_005605_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.11228 142.615 57.1223 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.308286 0.145456 0 0 465.335

CAGE analysis