Hb_132840_070

Information

Type -
Description -
Location Contig132840: 49433-50677
Sequence    

Annotation

kegg
ID rcu:RCOM_1339960
description cation efflux protein/ zinc transporter, putative (EC:1.3.1.74)
nr
ID AAR23528.1
description metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
swissprot
ID Q9ZT63
description Metal tolerance protein 1 OS=Arabidopsis thaliana GN=MTP1 PE=1 SV=2
trembl
ID Q6STE2
description Metal tolerance protein 1 OS=Populus trichocarpa x Populus deltoides GN=MTP1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_070 0.0 - - metal tolerance protein 1 [Populus trichocarpa x Populus deltoides]
2 Hb_000106_030 0.1316966275 - - amino acid transporter, putative [Ricinus communis]
3 Hb_069696_010 0.1464664887 - - hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
4 Hb_000077_360 0.1544296592 - - sugar transporter, putative [Ricinus communis]
5 Hb_001142_010 0.1646051625 - - PREDICTED: alcohol dehydrogenase-like 6 [Jatropha curcas]
6 Hb_000336_230 0.1789829313 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa007609mg [Prunus persica]
7 Hb_015675_030 0.1874660161 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
8 Hb_000110_060 0.1878194468 - - PREDICTED: uncharacterized protein LOC105636258 [Jatropha curcas]
9 Hb_000310_100 0.1879463782 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000477_040 0.1929798356 - - conserved hypothetical protein [Ricinus communis]
11 Hb_025466_010 0.1935901603 - - unnamed protein product [Vitis vinifera]
12 Hb_005976_010 0.1942462666 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
13 Hb_069355_010 0.1954047729 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
14 Hb_001481_130 0.1954803853 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005470_030 0.1958118809 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 isoform X2 [Jatropha curcas]
16 Hb_000381_010 0.1970591213 - - PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Jatropha curcas]
17 Hb_003878_050 0.2030306281 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
18 Hb_001673_100 0.2036626987 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
19 Hb_000849_120 0.2038293186 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
20 Hb_002320_080 0.2049671851 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_132840_070 Hb_132840_070 Hb_000106_030 Hb_000106_030 Hb_132840_070--Hb_000106_030 Hb_069696_010 Hb_069696_010 Hb_132840_070--Hb_069696_010 Hb_000077_360 Hb_000077_360 Hb_132840_070--Hb_000077_360 Hb_001142_010 Hb_001142_010 Hb_132840_070--Hb_001142_010 Hb_000336_230 Hb_000336_230 Hb_132840_070--Hb_000336_230 Hb_015675_030 Hb_015675_030 Hb_132840_070--Hb_015675_030 Hb_000836_060 Hb_000836_060 Hb_000106_030--Hb_000836_060 Hb_000181_460 Hb_000181_460 Hb_000106_030--Hb_000181_460 Hb_000110_060 Hb_000110_060 Hb_000106_030--Hb_000110_060 Hb_000849_120 Hb_000849_120 Hb_000106_030--Hb_000849_120 Hb_003778_020 Hb_003778_020 Hb_000106_030--Hb_003778_020 Hb_000310_100 Hb_000310_100 Hb_069696_010--Hb_000310_100 Hb_025466_010 Hb_025466_010 Hb_069696_010--Hb_025466_010 Hb_001863_020 Hb_001863_020 Hb_069696_010--Hb_001863_020 Hb_069696_010--Hb_001142_010 Hb_010422_070 Hb_010422_070 Hb_069696_010--Hb_010422_070 Hb_000077_360--Hb_000106_030 Hb_005976_010 Hb_005976_010 Hb_000077_360--Hb_005976_010 Hb_007534_060 Hb_007534_060 Hb_000077_360--Hb_007534_060 Hb_003197_010 Hb_003197_010 Hb_000077_360--Hb_003197_010 Hb_000477_040 Hb_000477_040 Hb_000077_360--Hb_000477_040 Hb_000381_010 Hb_000381_010 Hb_001142_010--Hb_000381_010 Hb_001142_010--Hb_015675_030 Hb_001953_080 Hb_001953_080 Hb_001142_010--Hb_001953_080 Hb_001142_010--Hb_000106_030 Hb_010288_060 Hb_010288_060 Hb_001142_010--Hb_010288_060 Hb_000946_110 Hb_000946_110 Hb_001142_010--Hb_000946_110 Hb_007590_090 Hb_007590_090 Hb_000336_230--Hb_007590_090 Hb_140459_010 Hb_140459_010 Hb_000336_230--Hb_140459_010 Hb_004007_110 Hb_004007_110 Hb_000336_230--Hb_004007_110 Hb_024468_010 Hb_024468_010 Hb_000336_230--Hb_024468_010 Hb_000336_230--Hb_069696_010 Hb_008699_030 Hb_008699_030 Hb_015675_030--Hb_008699_030 Hb_000240_030 Hb_000240_030 Hb_015675_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_015675_030--Hb_001195_070 Hb_003453_050 Hb_003453_050 Hb_015675_030--Hb_003453_050 Hb_015675_030--Hb_000381_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.484336 0.865241 2.58967 16.475 0.243473 0.349464
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19345 2.96274 8.02632 7.28748 13.4912

CAGE analysis