Hb_132840_090

Information

Type transcription factor
Description TF Family: Pseudo ARR-B
Location Contig132840: 55822-61969
Sequence    

Annotation

kegg
ID rcu:RCOM_1339810
description sensory transduction histidine kinase, putative
nr
ID XP_012083098.1
description PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
swissprot
ID Q689G6
description Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1
trembl
ID A0A067K9B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14180 PE=4 SV=1
Gene Ontology
ID GO:0005515
description two-component response regulator-like aprr9 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09357: 55862-61881 , PASA_asmbl_09359: 59535-59687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_090 0.0 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR3 isoform X1 [Jatropha curcas]
2 Hb_009040_010 0.1230829986 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
3 Hb_027402_100 0.1237432693 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
4 Hb_004218_080 0.1315792364 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
5 Hb_011360_090 0.1367923086 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
6 Hb_001662_170 0.14354393 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
7 Hb_002534_050 0.1447816322 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
8 Hb_010589_130 0.1564219801 - - PREDICTED: uncharacterized protein LOC104884346 [Beta vulgaris subsp. vulgaris]
9 Hb_001989_060 0.1582202049 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
10 Hb_004106_010 0.1621080717 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
11 Hb_001345_030 0.1621207862 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
12 Hb_000318_410 0.1675913482 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
13 Hb_002910_010 0.1683211191 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
14 Hb_000753_140 0.1694186135 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
15 Hb_000805_040 0.1712054963 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
16 Hb_000071_140 0.1720109802 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
17 Hb_003216_050 0.1720444584 - - PREDICTED: OBERON-like protein [Jatropha curcas]
18 Hb_002498_250 0.1725155619 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
19 Hb_000465_100 0.1740010127 - - catalytic, putative [Ricinus communis]
20 Hb_007193_030 0.1741493839 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_132840_090 Hb_132840_090 Hb_009040_010 Hb_009040_010 Hb_132840_090--Hb_009040_010 Hb_027402_100 Hb_027402_100 Hb_132840_090--Hb_027402_100 Hb_004218_080 Hb_004218_080 Hb_132840_090--Hb_004218_080 Hb_011360_090 Hb_011360_090 Hb_132840_090--Hb_011360_090 Hb_001662_170 Hb_001662_170 Hb_132840_090--Hb_001662_170 Hb_002534_050 Hb_002534_050 Hb_132840_090--Hb_002534_050 Hb_009040_010--Hb_002534_050 Hb_009040_010--Hb_011360_090 Hb_001258_150 Hb_001258_150 Hb_009040_010--Hb_001258_150 Hb_000071_140 Hb_000071_140 Hb_009040_010--Hb_000071_140 Hb_009040_010--Hb_001662_170 Hb_003106_240 Hb_003106_240 Hb_027402_100--Hb_003106_240 Hb_027402_100--Hb_004218_080 Hb_000753_140 Hb_000753_140 Hb_027402_100--Hb_000753_140 Hb_000318_410 Hb_000318_410 Hb_027402_100--Hb_000318_410 Hb_011457_080 Hb_011457_080 Hb_027402_100--Hb_011457_080 Hb_007193_030 Hb_007193_030 Hb_004218_080--Hb_007193_030 Hb_005725_280 Hb_005725_280 Hb_004218_080--Hb_005725_280 Hb_002498_250 Hb_002498_250 Hb_004218_080--Hb_002498_250 Hb_000156_080 Hb_000156_080 Hb_004218_080--Hb_000156_080 Hb_000365_340 Hb_000365_340 Hb_004218_080--Hb_000365_340 Hb_004218_080--Hb_003106_240 Hb_012787_040 Hb_012787_040 Hb_011360_090--Hb_012787_040 Hb_000805_040 Hb_000805_040 Hb_011360_090--Hb_000805_040 Hb_011360_090--Hb_001662_170 Hb_000803_060 Hb_000803_060 Hb_011360_090--Hb_000803_060 Hb_006414_020 Hb_006414_020 Hb_011360_090--Hb_006414_020 Hb_004106_010 Hb_004106_010 Hb_001662_170--Hb_004106_010 Hb_001662_170--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_001662_170--Hb_004032_310 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_003752_120 Hb_003752_120 Hb_001662_170--Hb_003752_120 Hb_002534_050--Hb_000071_140 Hb_002534_050--Hb_001662_170 Hb_002534_050--Hb_011360_090 Hb_001489_120 Hb_001489_120 Hb_002534_050--Hb_001489_120 Hb_002534_050--Hb_001258_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.86444 138.764 51.6827 31.6243 11.0149 10.9919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.61876 1.59118 3.90824 5.94324 39.3625

CAGE analysis