Hb_132840_100

Information

Type -
Description -
Location Contig132840: 63694-67226
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18030g
description POPTRDRAFT_644658; hypothetical protein
nr
ID XP_012083101.1
description PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
swissprot
ID Q8L838
description Conserved oligomeric Golgi complex subunit 4 OS=Arabidopsis thaliana GN=COG4 PE=2 SV=1
trembl
ID A0A067JX05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14183 PE=4 SV=1
Gene Ontology
ID GO:0005737
description conserved oligomeric golgi complex subunit 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09361: 65307-67343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_100 0.0 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
2 Hb_001638_300 0.0676615544 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 4 [Jatropha curcas]
3 Hb_032920_130 0.0848364942 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
4 Hb_000035_410 0.0877089633 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
5 Hb_002044_170 0.0890202553 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
6 Hb_000176_130 0.0896918312 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]
7 Hb_000365_330 0.0923856964 - - zinc finger protein, putative [Ricinus communis]
8 Hb_013818_030 0.0989131544 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004629_010 0.0989610422 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
10 Hb_004223_290 0.1024798687 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
11 Hb_006787_060 0.1043845108 - - PREDICTED: probable E3 ubiquitin ligase SUD1 isoform X2 [Jatropha curcas]
12 Hb_001235_230 0.1069234218 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
13 Hb_001301_090 0.1074382401 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000832_220 0.1104326749 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
15 Hb_030627_060 0.1112594715 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
16 Hb_010417_060 0.1121407917 - - PREDICTED: protein SGT1 homolog A-like [Jatropha curcas]
17 Hb_000206_120 0.1125181301 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
18 Hb_027136_010 0.1129355387 - - hypothetical protein L484_010426 [Morus notabilis]
19 Hb_001366_210 0.1132347037 - - cathepsin B, putative [Ricinus communis]
20 Hb_147505_010 0.1140297121 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]

Gene co-expression network

sample Hb_132840_100 Hb_132840_100 Hb_001638_300 Hb_001638_300 Hb_132840_100--Hb_001638_300 Hb_032920_130 Hb_032920_130 Hb_132840_100--Hb_032920_130 Hb_000035_410 Hb_000035_410 Hb_132840_100--Hb_000035_410 Hb_002044_170 Hb_002044_170 Hb_132840_100--Hb_002044_170 Hb_000176_130 Hb_000176_130 Hb_132840_100--Hb_000176_130 Hb_000365_330 Hb_000365_330 Hb_132840_100--Hb_000365_330 Hb_001638_300--Hb_000365_330 Hb_004129_070 Hb_004129_070 Hb_001638_300--Hb_004129_070 Hb_001638_300--Hb_032920_130 Hb_147505_010 Hb_147505_010 Hb_001638_300--Hb_147505_010 Hb_001033_050 Hb_001033_050 Hb_001638_300--Hb_001033_050 Hb_010417_060 Hb_010417_060 Hb_032920_130--Hb_010417_060 Hb_000261_030 Hb_000261_030 Hb_032920_130--Hb_000261_030 Hb_032920_130--Hb_002044_170 Hb_032920_130--Hb_000035_410 Hb_006787_060 Hb_006787_060 Hb_032920_130--Hb_006787_060 Hb_001235_230 Hb_001235_230 Hb_032920_130--Hb_001235_230 Hb_000035_410--Hb_000261_030 Hb_000035_410--Hb_001235_230 Hb_027380_140 Hb_027380_140 Hb_000035_410--Hb_027380_140 Hb_000785_040 Hb_000785_040 Hb_000035_410--Hb_000785_040 Hb_000035_410--Hb_002044_170 Hb_002044_170--Hb_001235_230 Hb_030627_060 Hb_030627_060 Hb_002044_170--Hb_030627_060 Hb_002044_170--Hb_000261_030 Hb_002044_170--Hb_000176_130 Hb_003124_160 Hb_003124_160 Hb_000176_130--Hb_003124_160 Hb_000176_130--Hb_001235_230 Hb_011202_020 Hb_011202_020 Hb_000176_130--Hb_011202_020 Hb_000176_130--Hb_000261_030 Hb_001401_060 Hb_001401_060 Hb_000176_130--Hb_001401_060 Hb_000664_110 Hb_000664_110 Hb_000365_330--Hb_000664_110 Hb_005946_210 Hb_005946_210 Hb_000365_330--Hb_005946_210 Hb_000352_070 Hb_000352_070 Hb_000365_330--Hb_000352_070 Hb_001109_060 Hb_001109_060 Hb_000365_330--Hb_001109_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.22591 9.89728 5.15576 9.31303 10.9315 10.1703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21815 1.2733 4.36142 4.57999 6.16961

CAGE analysis