Hb_132840_120

Information

Type -
Description -
Location Contig132840: 72178-75545
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_327694
description protein binding protein
nr
ID KHN15880.1
description Vacuolar protein sorting-associated protein 8 like [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2Q3L6
description Vacuolar protein sorting-associated protein 8 like OS=Glycine soja GN=glysoja_013096 PE=4 SV=1
Gene Ontology
ID GO:0006886
description vacuolar protein sorting-associated protein 8 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_120 0.0 - - Vacuolar protein sorting-associated protein 8 like [Glycine soja]
2 Hb_004728_030 0.0602080786 - - hypothetical protein, partial [Lactobacillus brevis]
3 Hb_012092_070 0.0771256635 - - PREDICTED: uncharacterized protein LOC105644084 [Jatropha curcas]
4 Hb_019818_010 0.1126463816 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
5 Hb_017400_010 0.1466833803 - - unnamed protein product [Vitis vinifera]
6 Hb_001184_140 0.169240125 - - hypothetical protein B456_008G022200 [Gossypium raimondii]
7 Hb_006746_010 0.1813441544 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_002367_030 0.2225810861 - - hypothetical protein POPTR_0001s30725g [Populus trichocarpa]
9 Hb_008609_030 0.2341937734 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000836_150 0.2349392317 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
11 Hb_004947_010 0.2710818188 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
12 Hb_067034_020 0.2723923533 - - PREDICTED: iridoid synthase [Jatropha curcas]
13 Hb_008054_060 0.2752729638 - - PREDICTED: beta-amyrin synthase-like [Populus euphratica]
14 Hb_001102_310 0.2992066431 - - Protein AFR, putative [Ricinus communis]
15 Hb_112440_010 0.302850632 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_094529_020 0.3140839039 - - leucine-rich repeat containing protein, putative [Ricinus communis]
17 Hb_003540_180 0.3179233363 - - -
18 Hb_001085_140 0.3274288843 - - conserved hypothetical protein [Ricinus communis]
19 Hb_033153_080 0.3385386073 - - PREDICTED: anthocyanidin 3-O-glucoside 2''-O-glucosyltransferase-like [Populus euphratica]
20 Hb_003996_030 0.3480416193 - - -

Gene co-expression network

sample Hb_132840_120 Hb_132840_120 Hb_004728_030 Hb_004728_030 Hb_132840_120--Hb_004728_030 Hb_012092_070 Hb_012092_070 Hb_132840_120--Hb_012092_070 Hb_019818_010 Hb_019818_010 Hb_132840_120--Hb_019818_010 Hb_017400_010 Hb_017400_010 Hb_132840_120--Hb_017400_010 Hb_001184_140 Hb_001184_140 Hb_132840_120--Hb_001184_140 Hb_006746_010 Hb_006746_010 Hb_132840_120--Hb_006746_010 Hb_004728_030--Hb_006746_010 Hb_004728_030--Hb_012092_070 Hb_004728_030--Hb_019818_010 Hb_008609_030 Hb_008609_030 Hb_004728_030--Hb_008609_030 Hb_004728_030--Hb_001184_140 Hb_012092_070--Hb_019818_010 Hb_012092_070--Hb_017400_010 Hb_002367_030 Hb_002367_030 Hb_012092_070--Hb_002367_030 Hb_012092_070--Hb_001184_140 Hb_019818_010--Hb_017400_010 Hb_019818_010--Hb_002367_030 Hb_019818_010--Hb_001184_140 Hb_017400_010--Hb_002367_030 Hb_003540_180 Hb_003540_180 Hb_017400_010--Hb_003540_180 Hb_001102_310 Hb_001102_310 Hb_017400_010--Hb_001102_310 Hb_001184_140--Hb_017400_010 Hb_001184_140--Hb_002367_030 Hb_006746_010--Hb_008609_030 Hb_006746_010--Hb_012092_070 Hb_000836_150 Hb_000836_150 Hb_006746_010--Hb_000836_150 Hb_029142_080 Hb_029142_080 Hb_006746_010--Hb_029142_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.025686 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0211878 0 0 0

CAGE analysis