Hb_132840_160

Information

Type -
Description -
Location Contig132840: 114078-114680
Sequence    

Annotation

kegg
ID rcu:RCOM_1339570
description hypothetical protein
nr
ID XP_002515066.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNJ5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1339570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001474_020 0.0858429012 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
3 Hb_011360_110 0.1059195385 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
4 Hb_002046_060 0.1260132131 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
5 Hb_003371_070 0.1282259341 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
6 Hb_000057_130 0.1322278881 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
7 Hb_000339_020 0.1396257878 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
8 Hb_000861_100 0.1397380901 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
9 Hb_000928_120 0.1399185288 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
10 Hb_000028_430 0.1446116652 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
11 Hb_005054_020 0.1463181082 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
12 Hb_147245_010 0.1484362442 - - casein kinase, putative [Ricinus communis]
13 Hb_002217_500 0.1489151806 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
14 Hb_002200_070 0.1513489375 - - PREDICTED: endoglucanase 9-like [Populus euphratica]
15 Hb_001699_170 0.153826977 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000062_660 0.1556226673 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
17 Hb_023344_110 0.1595171798 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
18 Hb_012707_040 0.1606216763 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]
19 Hb_000645_200 0.1614536934 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
20 Hb_007537_030 0.1620115355 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_132840_160 Hb_132840_160 Hb_001474_020 Hb_001474_020 Hb_132840_160--Hb_001474_020 Hb_011360_110 Hb_011360_110 Hb_132840_160--Hb_011360_110 Hb_002046_060 Hb_002046_060 Hb_132840_160--Hb_002046_060 Hb_003371_070 Hb_003371_070 Hb_132840_160--Hb_003371_070 Hb_000057_130 Hb_000057_130 Hb_132840_160--Hb_000057_130 Hb_000339_020 Hb_000339_020 Hb_132840_160--Hb_000339_020 Hb_001474_020--Hb_011360_110 Hb_001474_020--Hb_002046_060 Hb_002217_500 Hb_002217_500 Hb_001474_020--Hb_002217_500 Hb_006469_070 Hb_006469_070 Hb_001474_020--Hb_006469_070 Hb_023344_110 Hb_023344_110 Hb_001474_020--Hb_023344_110 Hb_028639_030 Hb_028639_030 Hb_011360_110--Hb_028639_030 Hb_005489_150 Hb_005489_150 Hb_011360_110--Hb_005489_150 Hb_004449_250 Hb_004449_250 Hb_011360_110--Hb_004449_250 Hb_000320_350 Hb_000320_350 Hb_011360_110--Hb_000320_350 Hb_001699_170 Hb_001699_170 Hb_002046_060--Hb_001699_170 Hb_002349_030 Hb_002349_030 Hb_002046_060--Hb_002349_030 Hb_000912_100 Hb_000912_100 Hb_002046_060--Hb_000912_100 Hb_002046_060--Hb_006469_070 Hb_003975_010 Hb_003975_010 Hb_002046_060--Hb_003975_010 Hb_000012_240 Hb_000012_240 Hb_002046_060--Hb_000012_240 Hb_002007_320 Hb_002007_320 Hb_003371_070--Hb_002007_320 Hb_003371_070--Hb_000057_130 Hb_000110_060 Hb_000110_060 Hb_003371_070--Hb_000110_060 Hb_001619_060 Hb_001619_060 Hb_003371_070--Hb_001619_060 Hb_000023_310 Hb_000023_310 Hb_003371_070--Hb_000023_310 Hb_007537_030 Hb_007537_030 Hb_003371_070--Hb_007537_030 Hb_000861_100 Hb_000861_100 Hb_000057_130--Hb_000861_100 Hb_001754_050 Hb_001754_050 Hb_000057_130--Hb_001754_050 Hb_004129_010 Hb_004129_010 Hb_000057_130--Hb_004129_010 Hb_000057_130--Hb_000339_020 Hb_000922_320 Hb_000922_320 Hb_000057_130--Hb_000922_320 Hb_000339_020--Hb_000861_100 Hb_003030_010 Hb_003030_010 Hb_000339_020--Hb_003030_010 Hb_000339_020--Hb_003371_070 Hb_000339_020--Hb_001754_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49237 14.2021 9.2211 30.1704 0.292584 0.882161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.11403 4.72637 6.34215 8.71961 13.1206

CAGE analysis