Hb_132840_190

Information

Type -
Description -
Location Contig132840: 142688-145568
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17930g
description POPTRDRAFT_644646; hypothetical protein
nr
ID XP_012083112.1
description PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q8LPG9
description Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1
trembl
ID A0A067K9D1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14195 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein iq-domain 1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09367: 142779-145581
cDNA
(Sanger)
(ID:Location)		 015_K03.ab1: 142779-143527

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132840_190 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
2 Hb_007221_020 0.0572968813 - - FAD-binding domain-containing family protein [Populus trichocarpa]
3 Hb_007922_030 0.065952967 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
4 Hb_001652_100 0.0665057503 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
5 Hb_008021_060 0.0692056045 - - Squalene monooxygenase, putative [Ricinus communis]
6 Hb_004453_160 0.0722058904 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000089_170 0.073475366 - - PREDICTED: uncharacterized protein LOC105134595 [Populus euphratica]
8 Hb_006711_030 0.0738852077 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
9 Hb_000556_060 0.0751618998 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
10 Hb_007120_120 0.0791765639 - - protein binding protein, putative [Ricinus communis]
11 Hb_000847_090 0.0804579917 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
12 Hb_005276_140 0.0830343157 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000058_180 0.0830911528 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
14 Hb_002307_140 0.0835861167 transcription factor TF Family: AUX/IAA aux/IAA family protein [Populus trichocarpa]
15 Hb_031321_020 0.0843281638 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
16 Hb_024071_030 0.0854315515 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
17 Hb_009663_020 0.0858634872 - - -
18 Hb_031022_030 0.086558829 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
19 Hb_007044_240 0.0892961388 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
20 Hb_167188_020 0.0899333921 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]

Gene co-expression network

sample Hb_132840_190 Hb_132840_190 Hb_007221_020 Hb_007221_020 Hb_132840_190--Hb_007221_020 Hb_007922_030 Hb_007922_030 Hb_132840_190--Hb_007922_030 Hb_001652_100 Hb_001652_100 Hb_132840_190--Hb_001652_100 Hb_008021_060 Hb_008021_060 Hb_132840_190--Hb_008021_060 Hb_004453_160 Hb_004453_160 Hb_132840_190--Hb_004453_160 Hb_000089_170 Hb_000089_170 Hb_132840_190--Hb_000089_170 Hb_031321_020 Hb_031321_020 Hb_007221_020--Hb_031321_020 Hb_007221_020--Hb_007922_030 Hb_031022_030 Hb_031022_030 Hb_007221_020--Hb_031022_030 Hb_007221_020--Hb_004453_160 Hb_019516_010 Hb_019516_010 Hb_007221_020--Hb_019516_010 Hb_007922_030--Hb_008021_060 Hb_007922_030--Hb_001652_100 Hb_001021_120 Hb_001021_120 Hb_007922_030--Hb_001021_120 Hb_000058_180 Hb_000058_180 Hb_007922_030--Hb_000058_180 Hb_007922_030--Hb_031321_020 Hb_001652_100--Hb_008021_060 Hb_007120_120 Hb_007120_120 Hb_001652_100--Hb_007120_120 Hb_001652_100--Hb_000058_180 Hb_009663_020 Hb_009663_020 Hb_001652_100--Hb_009663_020 Hb_016734_100 Hb_016734_100 Hb_001652_100--Hb_016734_100 Hb_008021_060--Hb_000058_180 Hb_008147_020 Hb_008147_020 Hb_008021_060--Hb_008147_020 Hb_008021_060--Hb_007120_120 Hb_004007_050 Hb_004007_050 Hb_004453_160--Hb_004007_050 Hb_000031_240 Hb_000031_240 Hb_004453_160--Hb_000031_240 Hb_004128_150 Hb_004128_150 Hb_004453_160--Hb_004128_150 Hb_002307_140 Hb_002307_140 Hb_004453_160--Hb_002307_140 Hb_006711_030 Hb_006711_030 Hb_000089_170--Hb_006711_030 Hb_167188_020 Hb_167188_020 Hb_000089_170--Hb_167188_020 Hb_000089_170--Hb_002307_140 Hb_007218_050 Hb_007218_050 Hb_000089_170--Hb_007218_050 Hb_012675_040 Hb_012675_040 Hb_000089_170--Hb_012675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.192729 22.3292 14.8074 0 0.108676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.018812 0 0.0281846 0.0588076 10.5265

CAGE analysis