Hb_132880_010

Information

Type -
Description -
Location Contig132880: 8030-13620
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02350g
description POPTRDRAFT_820216; hypothetical protein
nr
ID XP_012081571.1
description PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
swissprot
ID Q9C7A2
description Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1
trembl
ID A0A067K142
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18422 PE=4 SV=1
Gene Ontology
ID GO:0005515
description PREDICTED: uncharacterized protein LOC105641595

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09369: 7927-8428 , PASA_asmbl_09370: 9886-13042 , PASA_asmbl_09371: 12248-13252 , PASA_asmbl_09372: 13308-13794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132880_010 0.0 - - PREDICTED: uncharacterized protein LOC105641595 [Jatropha curcas]
2 Hb_002073_130 0.0483729484 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
3 Hb_003549_100 0.0616492988 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
4 Hb_095744_010 0.0619418545 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Fragaria vesca subsp. vesca]
5 Hb_144550_010 0.0630518323 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
6 Hb_002326_010 0.0675672195 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]
7 Hb_001593_040 0.0694910068 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
8 Hb_064445_020 0.0708366127 - - PREDICTED: serine carboxypeptidase-like 34 [Populus euphratica]
9 Hb_000917_300 0.0710975859 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
10 Hb_000224_190 0.0732687812 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000076_240 0.0746177226 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
12 Hb_008453_050 0.074692347 - - PREDICTED: peroxidase 64 [Jatropha curcas]
13 Hb_154038_010 0.078140282 - - cytochrome P450, putative [Ricinus communis]
14 Hb_003025_170 0.0792700296 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
15 Hb_001472_150 0.082755754 - - PREDICTED: cytochrome P450 86A7 [Jatropha curcas]
16 Hb_104014_020 0.0834780439 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
17 Hb_004459_010 0.0835985477 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
18 Hb_185811_010 0.08406949 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
19 Hb_072771_010 0.0840862574 - - Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis]
20 Hb_000077_040 0.0846753117 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]

Gene co-expression network

sample Hb_132880_010 Hb_132880_010 Hb_002073_130 Hb_002073_130 Hb_132880_010--Hb_002073_130 Hb_003549_100 Hb_003549_100 Hb_132880_010--Hb_003549_100 Hb_095744_010 Hb_095744_010 Hb_132880_010--Hb_095744_010 Hb_144550_010 Hb_144550_010 Hb_132880_010--Hb_144550_010 Hb_002326_010 Hb_002326_010 Hb_132880_010--Hb_002326_010 Hb_001593_040 Hb_001593_040 Hb_132880_010--Hb_001593_040 Hb_000809_010 Hb_000809_010 Hb_002073_130--Hb_000809_010 Hb_002073_130--Hb_001593_040 Hb_064445_020 Hb_064445_020 Hb_002073_130--Hb_064445_020 Hb_010883_160 Hb_010883_160 Hb_002073_130--Hb_010883_160 Hb_003151_020 Hb_003151_020 Hb_002073_130--Hb_003151_020 Hb_001397_020 Hb_001397_020 Hb_003549_100--Hb_001397_020 Hb_029587_010 Hb_029587_010 Hb_003549_100--Hb_029587_010 Hb_010589_010 Hb_010589_010 Hb_003549_100--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003549_100--Hb_002809_180 Hb_003549_100--Hb_095744_010 Hb_004459_010 Hb_004459_010 Hb_095744_010--Hb_004459_010 Hb_095744_010--Hb_144550_010 Hb_000917_300 Hb_000917_300 Hb_095744_010--Hb_000917_300 Hb_095744_010--Hb_010589_010 Hb_001472_150 Hb_001472_150 Hb_144550_010--Hb_001472_150 Hb_144550_010--Hb_029587_010 Hb_144550_010--Hb_001593_040 Hb_144550_010--Hb_064445_020 Hb_000224_190 Hb_000224_190 Hb_002326_010--Hb_000224_190 Hb_002326_010--Hb_064445_020 Hb_008453_050 Hb_008453_050 Hb_002326_010--Hb_008453_050 Hb_002326_010--Hb_001593_040 Hb_154038_010 Hb_154038_010 Hb_002326_010--Hb_154038_010 Hb_072771_010 Hb_072771_010 Hb_002326_010--Hb_072771_010 Hb_001593_040--Hb_064445_020 Hb_001593_040--Hb_008453_050 Hb_000077_040 Hb_000077_040 Hb_001593_040--Hb_000077_040 Hb_001593_040--Hb_154038_010 Hb_104014_020 Hb_104014_020 Hb_001593_040--Hb_104014_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0289091 0.89853 2.21886 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0249469 3.02925

CAGE analysis