Hb_132880_040

Information

Type -
Description -
Location Contig132880: 44925-58590
Sequence    

Annotation

kegg
ID pop:POPTR_0010s24370g
description POPTRDRAFT_822715; hypothetical protein
nr
ID XP_012074638.1
description PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9ZNT0
description Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 OS=Arabidopsis thaliana GN=SKD1 PE=1 SV=1
trembl
ID B9HVY7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s24370g PE=3 SV=1
Gene Ontology
ID GO:0005524
description vacuolar protein sorting-associated protein 4b-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09373: 45265-51860 , PASA_asmbl_09374: 53093-57972 , PASA_asmbl_09375: 58104-58357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132880_040 0.0 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
2 Hb_001157_200 0.0597132556 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
3 Hb_000035_390 0.0715414771 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
4 Hb_004677_050 0.0840304938 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
5 Hb_000046_170 0.0867878109 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
6 Hb_000984_170 0.0888394417 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
7 Hb_006452_120 0.0938163322 - - PREDICTED: protein FAM188A [Jatropha curcas]
8 Hb_002357_060 0.0948944064 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
9 Hb_000237_050 0.0957576748 - - CP2 [Hevea brasiliensis]
10 Hb_016347_010 0.0959769452 - - protein transporter, putative [Ricinus communis]
11 Hb_000367_090 0.0962225309 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
12 Hb_000928_190 0.0966931808 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
13 Hb_004450_070 0.0983169637 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
14 Hb_028487_160 0.0983565132 - - clathrin assembly protein, putative [Ricinus communis]
15 Hb_019280_010 0.102581322 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
16 Hb_005648_010 0.1030755243 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
17 Hb_002213_020 0.1034614974 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
18 Hb_000012_310 0.1034846284 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
19 Hb_000613_070 0.1035501058 - - -
20 Hb_005663_110 0.1039247002 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_132880_040 Hb_132880_040 Hb_001157_200 Hb_001157_200 Hb_132880_040--Hb_001157_200 Hb_000035_390 Hb_000035_390 Hb_132880_040--Hb_000035_390 Hb_004677_050 Hb_004677_050 Hb_132880_040--Hb_004677_050 Hb_000046_170 Hb_000046_170 Hb_132880_040--Hb_000046_170 Hb_000984_170 Hb_000984_170 Hb_132880_040--Hb_000984_170 Hb_006452_120 Hb_006452_120 Hb_132880_040--Hb_006452_120 Hb_003544_030 Hb_003544_030 Hb_001157_200--Hb_003544_030 Hb_007747_080 Hb_007747_080 Hb_001157_200--Hb_007747_080 Hb_001157_200--Hb_000984_170 Hb_001157_200--Hb_006452_120 Hb_005663_110 Hb_005663_110 Hb_001157_200--Hb_005663_110 Hb_005648_010 Hb_005648_010 Hb_000035_390--Hb_005648_010 Hb_000185_220 Hb_000185_220 Hb_000035_390--Hb_000185_220 Hb_004607_070 Hb_004607_070 Hb_000035_390--Hb_004607_070 Hb_000035_390--Hb_000046_170 Hb_000367_090 Hb_000367_090 Hb_000035_390--Hb_000367_090 Hb_002213_020 Hb_002213_020 Hb_004677_050--Hb_002213_020 Hb_004677_050--Hb_000984_170 Hb_004677_050--Hb_005663_110 Hb_016347_010 Hb_016347_010 Hb_004677_050--Hb_016347_010 Hb_004208_050 Hb_004208_050 Hb_004677_050--Hb_004208_050 Hb_002749_060 Hb_002749_060 Hb_004677_050--Hb_002749_060 Hb_000046_170--Hb_000367_090 Hb_000046_170--Hb_004607_070 Hb_000179_270 Hb_000179_270 Hb_000046_170--Hb_000179_270 Hb_028487_160 Hb_028487_160 Hb_000046_170--Hb_028487_160 Hb_000087_070 Hb_000087_070 Hb_000046_170--Hb_000087_070 Hb_000165_080 Hb_000165_080 Hb_000046_170--Hb_000165_080 Hb_004030_080 Hb_004030_080 Hb_000984_170--Hb_004030_080 Hb_000984_170--Hb_005663_110 Hb_000984_170--Hb_006452_120 Hb_000011_060 Hb_000011_060 Hb_000984_170--Hb_000011_060 Hb_002908_050 Hb_002908_050 Hb_000984_170--Hb_002908_050 Hb_010515_020 Hb_010515_020 Hb_006452_120--Hb_010515_020 Hb_006452_120--Hb_004030_080 Hb_000574_450 Hb_000574_450 Hb_006452_120--Hb_000574_450 Hb_008748_030 Hb_008748_030 Hb_006452_120--Hb_008748_030 Hb_000012_310 Hb_000012_310 Hb_006452_120--Hb_000012_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9769 7.46653 3.56001 12.8398 3.63233 4.57022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.12797 5.26529 4.84242 11.5226 9.51563

CAGE analysis