Hb_132998_010

Information

Type -
Description -
Location Contig132998: 3558-4023
Sequence    

Annotation

kegg
ID tcc:TCM_042512
description ABI3/VP1 2, putative
nr
ID KDP42400.1
description hypothetical protein JCGZ_00197 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LD26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00197 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_132998_010 0.0 - - hypothetical protein JCGZ_00197 [Jatropha curcas]
2 Hb_000286_090 0.1580525304 transcription factor TF Family: B3 hypothetical protein JCGZ_00197 [Jatropha curcas]
3 Hb_001163_090 0.1960280477 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
4 Hb_021888_060 0.2179766715 - - PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Jatropha curcas]
5 Hb_000230_030 0.2240021872 - - hypothetical protein B456_013G2021001, partial [Gossypium raimondii]
6 Hb_002289_090 0.2376771585 - - cytoplasmic tRNA 2-thiolation protein 2-like [Scleropages formosus]
7 Hb_001493_120 0.2416700115 - - -
8 Hb_001387_020 0.2428722731 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
9 Hb_092820_020 0.2439280352 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000563_190 0.2448490793 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
11 Hb_003683_080 0.2544688995 - - Angio-associated migratory cell protein, putative [Ricinus communis]
12 Hb_080048_020 0.256522573 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000010_260 0.2567695156 - - PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]
14 Hb_000574_460 0.2616717699 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
15 Hb_003294_100 0.2626324873 - - hypothetical protein VITISV_009629 [Vitis vinifera]
16 Hb_002719_080 0.2632667083 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
17 Hb_000616_040 0.2641420134 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_002112_010 0.2644539121 - - hypothetical protein POPTR_0001s45830g [Populus trichocarpa]
19 Hb_115940_010 0.2652027343 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
20 Hb_000753_190 0.2653871585 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]

Gene co-expression network

sample Hb_132998_010 Hb_132998_010 Hb_000286_090 Hb_000286_090 Hb_132998_010--Hb_000286_090 Hb_001163_090 Hb_001163_090 Hb_132998_010--Hb_001163_090 Hb_021888_060 Hb_021888_060 Hb_132998_010--Hb_021888_060 Hb_000230_030 Hb_000230_030 Hb_132998_010--Hb_000230_030 Hb_002289_090 Hb_002289_090 Hb_132998_010--Hb_002289_090 Hb_001493_120 Hb_001493_120 Hb_132998_010--Hb_001493_120 Hb_000286_090--Hb_021888_060 Hb_092820_020 Hb_092820_020 Hb_000286_090--Hb_092820_020 Hb_000286_090--Hb_001163_090 Hb_000286_090--Hb_002289_090 Hb_080048_020 Hb_080048_020 Hb_000286_090--Hb_080048_020 Hb_003124_060 Hb_003124_060 Hb_001163_090--Hb_003124_060 Hb_000281_230 Hb_000281_230 Hb_001163_090--Hb_000281_230 Hb_115940_010 Hb_115940_010 Hb_001163_090--Hb_115940_010 Hb_006342_020 Hb_006342_020 Hb_001163_090--Hb_006342_020 Hb_004635_060 Hb_004635_060 Hb_001163_090--Hb_004635_060 Hb_002719_080 Hb_002719_080 Hb_021888_060--Hb_002719_080 Hb_006718_010 Hb_006718_010 Hb_021888_060--Hb_006718_010 Hb_000648_020 Hb_000648_020 Hb_021888_060--Hb_000648_020 Hb_000364_210 Hb_000364_210 Hb_021888_060--Hb_000364_210 Hb_002025_300 Hb_002025_300 Hb_021888_060--Hb_002025_300 Hb_103118_020 Hb_103118_020 Hb_021888_060--Hb_103118_020 Hb_000635_260 Hb_000635_260 Hb_000230_030--Hb_000635_260 Hb_003057_010 Hb_003057_010 Hb_000230_030--Hb_003057_010 Hb_000574_460 Hb_000574_460 Hb_000230_030--Hb_000574_460 Hb_002131_030 Hb_002131_030 Hb_000230_030--Hb_002131_030 Hb_003124_020 Hb_003124_020 Hb_000230_030--Hb_003124_020 Hb_001911_060 Hb_001911_060 Hb_002289_090--Hb_001911_060 Hb_000931_010 Hb_000931_010 Hb_002289_090--Hb_000931_010 Hb_001080_220 Hb_001080_220 Hb_002289_090--Hb_001080_220 Hb_012979_020 Hb_012979_020 Hb_002289_090--Hb_012979_020 Hb_000907_170 Hb_000907_170 Hb_002289_090--Hb_000907_170 Hb_001493_120--Hb_000574_460 Hb_000429_090 Hb_000429_090 Hb_001493_120--Hb_000429_090 Hb_002809_150 Hb_002809_150 Hb_001493_120--Hb_002809_150 Hb_091194_010 Hb_091194_010 Hb_001493_120--Hb_091194_010 Hb_001136_060 Hb_001136_060 Hb_001493_120--Hb_001136_060 Hb_001284_010 Hb_001284_010 Hb_001493_120--Hb_001284_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0705739 0 0.176522 0 0.209096 1.14995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.99455 3.78952 1.2902 2.75512 2.13038

CAGE analysis