Hb_133047_020

Information

Type -
Description -
Location Contig133047: 27058-33888
Sequence    

Annotation

kegg
ID rcu:RCOM_1577630
description lysophosphatidic acid acyltransferase, putative (EC:2.3.1.51)
nr
ID XP_002513487.1
description lysophosphatidic acid acyltransferase, putative [Ricinus communis]
swissprot
ID Q9SYC8
description 1-acyl-sn-glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=LPAT3 PE=2 SV=1
trembl
ID B9RIB8
description Lysophosphatidic acid acyltransferase, putative OS=Ricinus communis GN=RCOM_1577630 PE=4 SV=1
Gene Ontology
ID GO:0016746
description 1-acyl-sn-glycerol-3-phosphate acyltransferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133047_020 0.0 - - lysophosphatidic acid acyltransferase, putative [Ricinus communis]
2 Hb_088410_010 0.2329987607 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_002473_140 0.2632614132 - - -
4 Hb_006113_010 0.2703766639 - - hypothetical protein VITISV_015014 [Vitis vinifera]
5 Hb_002047_020 0.2778229094 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
6 Hb_001671_090 0.2837574836 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_159938_010 0.297792746 - - phosphoprotein phosphatase, putative [Ricinus communis]
8 Hb_001188_120 0.30544832 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
9 Hb_097021_010 0.3068791217 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
10 Hb_007078_010 0.3082457866 - - conserved hypothetical protein [Ricinus communis]
11 Hb_142570_010 0.3091841977 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
12 Hb_001085_210 0.3148907556 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
13 Hb_002122_020 0.3225641747 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
14 Hb_001519_210 0.3246573701 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
15 Hb_050334_010 0.3253189001 - - -
16 Hb_012092_080 0.3301053124 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
17 Hb_128531_010 0.3329882349 - - phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_001001_110 0.3339528607 - - -
19 Hb_002869_070 0.3347841104 - - -
20 Hb_002599_040 0.3372697247 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_133047_020 Hb_133047_020 Hb_088410_010 Hb_088410_010 Hb_133047_020--Hb_088410_010 Hb_002473_140 Hb_002473_140 Hb_133047_020--Hb_002473_140 Hb_006113_010 Hb_006113_010 Hb_133047_020--Hb_006113_010 Hb_002047_020 Hb_002047_020 Hb_133047_020--Hb_002047_020 Hb_001671_090 Hb_001671_090 Hb_133047_020--Hb_001671_090 Hb_159938_010 Hb_159938_010 Hb_133047_020--Hb_159938_010 Hb_088410_010--Hb_002473_140 Hb_088410_010--Hb_159938_010 Hb_002122_020 Hb_002122_020 Hb_088410_010--Hb_002122_020 Hb_002869_070 Hb_002869_070 Hb_088410_010--Hb_002869_070 Hb_050334_010 Hb_050334_010 Hb_088410_010--Hb_050334_010 Hb_142570_010 Hb_142570_010 Hb_088410_010--Hb_142570_010 Hb_002473_140--Hb_159938_010 Hb_002473_140--Hb_002869_070 Hb_002473_140--Hb_050334_010 Hb_001519_210 Hb_001519_210 Hb_002473_140--Hb_001519_210 Hb_154997_010 Hb_154997_010 Hb_002473_140--Hb_154997_010 Hb_139576_010 Hb_139576_010 Hb_006113_010--Hb_139576_010 Hb_032531_010 Hb_032531_010 Hb_006113_010--Hb_032531_010 Hb_000101_150 Hb_000101_150 Hb_006113_010--Hb_000101_150 Hb_000940_190 Hb_000940_190 Hb_006113_010--Hb_000940_190 Hb_099723_010 Hb_099723_010 Hb_006113_010--Hb_099723_010 Hb_001496_080 Hb_001496_080 Hb_002047_020--Hb_001496_080 Hb_001188_120 Hb_001188_120 Hb_002047_020--Hb_001188_120 Hb_001341_020 Hb_001341_020 Hb_002047_020--Hb_001341_020 Hb_003186_040 Hb_003186_040 Hb_002047_020--Hb_003186_040 Hb_001085_210 Hb_001085_210 Hb_002047_020--Hb_001085_210 Hb_003333_040 Hb_003333_040 Hb_001671_090--Hb_003333_040 Hb_032733_020 Hb_032733_020 Hb_001671_090--Hb_032733_020 Hb_013420_060 Hb_013420_060 Hb_001671_090--Hb_013420_060 Hb_053998_020 Hb_053998_020 Hb_001671_090--Hb_053998_020 Hb_114271_010 Hb_114271_010 Hb_001671_090--Hb_114271_010 Hb_000122_260 Hb_000122_260 Hb_001671_090--Hb_000122_260 Hb_043792_020 Hb_043792_020 Hb_159938_010--Hb_043792_020 Hb_159938_010--Hb_154997_010 Hb_159938_010--Hb_002869_070 Hb_159938_010--Hb_001519_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0783031 0 0.0795761 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.171836 0.114124 0.381644

CAGE analysis