Hb_133127_010

Information

Type -
Description -
Location Contig133127: 18-1787
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09469: 478-646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133127_010 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_169620_010 0.2129506843 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
3 Hb_002461_080 0.2182728452 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
4 Hb_002119_070 0.2219890119 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_000413_230 0.2242074419 - - thioredoxin h [Hevea brasiliensis]
6 Hb_026337_010 0.2253423579 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10002052mg [Citrus clementina]
7 Hb_001814_080 0.2266202975 - - PREDICTED: oleosin 1-like [Jatropha curcas]
8 Hb_004648_100 0.2285274341 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
9 Hb_008226_100 0.2315528697 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
10 Hb_003371_210 0.2321472191 - - unnamed protein product [Vitis vinifera]
11 Hb_034337_010 0.2379312086 - - vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_001278_040 0.2384353813 - - PREDICTED: lipid phosphate phosphatase 1-like isoform X1 [Jatropha curcas]
13 Hb_000679_200 0.2391398957 - - EIN3-binding F box protein 1 [Theobroma cacao]
14 Hb_029977_050 0.2412128231 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA2 isoform X1 [Jatropha curcas]
15 Hb_002326_080 0.2422257139 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
16 Hb_000589_130 0.2441123209 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
17 Hb_001544_080 0.2461242397 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
18 Hb_000181_450 0.24641723 - - hypothetical protein JCGZ_20984 [Jatropha curcas]
19 Hb_010605_010 0.2475114654 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
20 Hb_151706_010 0.2476386242 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]

Gene co-expression network

sample Hb_133127_010 Hb_133127_010 Hb_169620_010 Hb_169620_010 Hb_133127_010--Hb_169620_010 Hb_002461_080 Hb_002461_080 Hb_133127_010--Hb_002461_080 Hb_002119_070 Hb_002119_070 Hb_133127_010--Hb_002119_070 Hb_000413_230 Hb_000413_230 Hb_133127_010--Hb_000413_230 Hb_026337_010 Hb_026337_010 Hb_133127_010--Hb_026337_010 Hb_001814_080 Hb_001814_080 Hb_133127_010--Hb_001814_080 Hb_004648_100 Hb_004648_100 Hb_169620_010--Hb_004648_100 Hb_066320_010 Hb_066320_010 Hb_169620_010--Hb_066320_010 Hb_060909_010 Hb_060909_010 Hb_169620_010--Hb_060909_010 Hb_163658_010 Hb_163658_010 Hb_169620_010--Hb_163658_010 Hb_000544_020 Hb_000544_020 Hb_169620_010--Hb_000544_020 Hb_001408_150 Hb_001408_150 Hb_169620_010--Hb_001408_150 Hb_000181_450 Hb_000181_450 Hb_002461_080--Hb_000181_450 Hb_008554_010 Hb_008554_010 Hb_002461_080--Hb_008554_010 Hb_011861_110 Hb_011861_110 Hb_002461_080--Hb_011861_110 Hb_001373_080 Hb_001373_080 Hb_002461_080--Hb_001373_080 Hb_001131_070 Hb_001131_070 Hb_002461_080--Hb_001131_070 Hb_073096_010 Hb_073096_010 Hb_002461_080--Hb_073096_010 Hb_010605_010 Hb_010605_010 Hb_002119_070--Hb_010605_010 Hb_004531_110 Hb_004531_110 Hb_002119_070--Hb_004531_110 Hb_000362_050 Hb_000362_050 Hb_002119_070--Hb_000362_050 Hb_002928_120 Hb_002928_120 Hb_002119_070--Hb_002928_120 Hb_001071_060 Hb_001071_060 Hb_002119_070--Hb_001071_060 Hb_151706_010 Hb_151706_010 Hb_002119_070--Hb_151706_010 Hb_000083_130 Hb_000083_130 Hb_000413_230--Hb_000083_130 Hb_003972_040 Hb_003972_040 Hb_000413_230--Hb_003972_040 Hb_000152_460 Hb_000152_460 Hb_000413_230--Hb_000152_460 Hb_034337_010 Hb_034337_010 Hb_000413_230--Hb_034337_010 Hb_001900_060 Hb_001900_060 Hb_000413_230--Hb_001900_060 Hb_000413_230--Hb_002928_120 Hb_141212_010 Hb_141212_010 Hb_026337_010--Hb_141212_010 Hb_063480_020 Hb_063480_020 Hb_026337_010--Hb_063480_020 Hb_000130_060 Hb_000130_060 Hb_026337_010--Hb_000130_060 Hb_002370_030 Hb_002370_030 Hb_026337_010--Hb_002370_030 Hb_000679_200 Hb_000679_200 Hb_026337_010--Hb_000679_200 Hb_001278_040 Hb_001278_040 Hb_026337_010--Hb_001278_040 Hb_000025_400 Hb_000025_400 Hb_001814_080--Hb_000025_400 Hb_001259_100 Hb_001259_100 Hb_001814_080--Hb_001259_100 Hb_002461_070 Hb_002461_070 Hb_001814_080--Hb_002461_070 Hb_001814_080--Hb_002928_120 Hb_010381_110 Hb_010381_110 Hb_001814_080--Hb_010381_110 Hb_000429_110 Hb_000429_110 Hb_001814_080--Hb_000429_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0547678 3.09867 0.308318 2.30381 0.124567 1.51134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20046 0 0.137873 1.93769 0.152566

CAGE analysis