Hb_133279_010

Information

Type -
Description -
Location Contig133279: 156-833
Sequence    

Annotation

kegg
ID rcu:RCOM_1511350
description spermidine synthase 1, putative (EC:2.1.1.53)
nr
ID XP_002511426.1
description spermidine synthase 1, putative [Ricinus communis]
swissprot
ID Q96557
description Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1
trembl
ID B9RB51
description Spermidine synthase 1, putative OS=Ricinus communis GN=RCOM_1511350 PE=3 SV=1
Gene Ontology
ID GO:0030750
description spermidine synthase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09476: 531-642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133279_010 0.0 - - spermidine synthase 1, putative [Ricinus communis]
2 Hb_012090_030 0.1775349443 - - PREDICTED: autophagy-related protein 8C isoform X2 [Phoenix dactylifera]
3 Hb_000389_040 0.1801438307 - - PREDICTED: BTB/POZ domain-containing protein At5g03250-like [Jatropha curcas]
4 Hb_002498_030 0.181356682 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000574_300 0.1981609438 - - receptor-kinase, putative [Ricinus communis]
6 Hb_001105_120 0.2023025054 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
7 Hb_000011_310 0.2049320909 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
8 Hb_059554_010 0.2101588208 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
9 Hb_009569_030 0.223216921 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
10 Hb_103942_030 0.2240152731 - - protein with unknown function [Ricinus communis]
11 Hb_000357_140 0.2269369245 - - hypothetical protein JCGZ_15089 [Jatropha curcas]
12 Hb_006157_010 0.2293866296 - - PREDICTED: endoglucanase 5 [Jatropha curcas]
13 Hb_000328_010 0.2317029049 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
14 Hb_001673_090 0.2337576694 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
15 Hb_002316_010 0.2350428971 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
16 Hb_017908_010 0.2379510841 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007416_100 0.2412383772 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
18 Hb_007925_010 0.2416856432 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 1 [Jatropha curcas]
19 Hb_009079_040 0.245829277 - - BnaA02g30070D [Brassica napus]
20 Hb_001635_010 0.2483578233 - - -

Gene co-expression network

sample Hb_133279_010 Hb_133279_010 Hb_012090_030 Hb_012090_030 Hb_133279_010--Hb_012090_030 Hb_000389_040 Hb_000389_040 Hb_133279_010--Hb_000389_040 Hb_002498_030 Hb_002498_030 Hb_133279_010--Hb_002498_030 Hb_000574_300 Hb_000574_300 Hb_133279_010--Hb_000574_300 Hb_001105_120 Hb_001105_120 Hb_133279_010--Hb_001105_120 Hb_000011_310 Hb_000011_310 Hb_133279_010--Hb_000011_310 Hb_012090_030--Hb_002498_030 Hb_011861_090 Hb_011861_090 Hb_012090_030--Hb_011861_090 Hb_000302_320 Hb_000302_320 Hb_012090_030--Hb_000302_320 Hb_010883_180 Hb_010883_180 Hb_012090_030--Hb_010883_180 Hb_019516_070 Hb_019516_070 Hb_012090_030--Hb_019516_070 Hb_103942_030 Hb_103942_030 Hb_000389_040--Hb_103942_030 Hb_000995_020 Hb_000995_020 Hb_000389_040--Hb_000995_020 Hb_000389_040--Hb_011861_090 Hb_000389_040--Hb_010883_180 Hb_102772_010 Hb_102772_010 Hb_000389_040--Hb_102772_010 Hb_017439_010 Hb_017439_010 Hb_002498_030--Hb_017439_010 Hb_000328_010 Hb_000328_010 Hb_002498_030--Hb_000328_010 Hb_001102_160 Hb_001102_160 Hb_002498_030--Hb_001102_160 Hb_003408_010 Hb_003408_010 Hb_002498_030--Hb_003408_010 Hb_034726_010 Hb_034726_010 Hb_002498_030--Hb_034726_010 Hb_002498_030--Hb_000011_310 Hb_002893_030 Hb_002893_030 Hb_000574_300--Hb_002893_030 Hb_006153_160 Hb_006153_160 Hb_000574_300--Hb_006153_160 Hb_005548_060 Hb_005548_060 Hb_000574_300--Hb_005548_060 Hb_003159_150 Hb_003159_150 Hb_000574_300--Hb_003159_150 Hb_000574_300--Hb_103942_030 Hb_132840_150 Hb_132840_150 Hb_001105_120--Hb_132840_150 Hb_017908_010 Hb_017908_010 Hb_001105_120--Hb_017908_010 Hb_000417_090 Hb_000417_090 Hb_001105_120--Hb_000417_090 Hb_000190_170 Hb_000190_170 Hb_001105_120--Hb_000190_170 Hb_004117_090 Hb_004117_090 Hb_001105_120--Hb_004117_090 Hb_010381_100 Hb_010381_100 Hb_001105_120--Hb_010381_100 Hb_000529_010 Hb_000529_010 Hb_000011_310--Hb_000529_010 Hb_009079_040 Hb_009079_040 Hb_000011_310--Hb_009079_040 Hb_004147_070 Hb_004147_070 Hb_000011_310--Hb_004147_070 Hb_001902_200 Hb_001902_200 Hb_000011_310--Hb_001902_200 Hb_005332_040 Hb_005332_040 Hb_000011_310--Hb_005332_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.380188 8.23567 22.3887 0 0.101603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51697 0.312221 4.23837 0.172932 4.48282

CAGE analysis