Hb_133508_010

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig133508: 16514-17500
Sequence    

Annotation

kegg
ID rcu:RCOM_0602390
description zinc finger protein, putative
nr
ID XP_012079164.1
description PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
swissprot
ID Q84TE9
description Dof zinc finger protein DOF5.3 OS=Arabidopsis thaliana GN=DOF5.3 PE=2 SV=1
trembl
ID A0A067KJ60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12335 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133508_010 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
2 Hb_024357_010 0.1339469801 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
3 Hb_127400_010 0.1455809435 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_002239_030 0.1557782109 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
5 Hb_024857_010 0.1560009186 - - glutaredoxin 2.1 [Hevea brasiliensis]
6 Hb_007137_030 0.1588010809 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
7 Hb_006911_060 0.1609586097 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
8 Hb_136027_010 0.1612176643 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_000431_030 0.1650186554 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
10 Hb_001897_030 0.1657364737 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
11 Hb_087468_010 0.1661611877 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
12 Hb_003602_090 0.1663814087 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
13 Hb_029238_020 0.1691129775 - - PREDICTED: expansin-like A1 [Jatropha curcas]
14 Hb_002248_090 0.1702204256 - - metallothionein 3-like protein [Hevea brasiliensis]
15 Hb_013607_010 0.1706504824 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
16 Hb_004531_010 0.1742311247 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
17 Hb_000723_060 0.174634754 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
18 Hb_000252_190 0.1748513534 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
19 Hb_012702_010 0.1763883143 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
20 Hb_006615_180 0.1769122284 - - hypothetical protein B456_003G103400 [Gossypium raimondii]

Gene co-expression network

sample Hb_133508_010 Hb_133508_010 Hb_024357_010 Hb_024357_010 Hb_133508_010--Hb_024357_010 Hb_127400_010 Hb_127400_010 Hb_133508_010--Hb_127400_010 Hb_002239_030 Hb_002239_030 Hb_133508_010--Hb_002239_030 Hb_024857_010 Hb_024857_010 Hb_133508_010--Hb_024857_010 Hb_007137_030 Hb_007137_030 Hb_133508_010--Hb_007137_030 Hb_006911_060 Hb_006911_060 Hb_133508_010--Hb_006911_060 Hb_001897_030 Hb_001897_030 Hb_024357_010--Hb_001897_030 Hb_005389_090 Hb_005389_090 Hb_024357_010--Hb_005389_090 Hb_024357_010--Hb_002239_030 Hb_132517_010 Hb_132517_010 Hb_024357_010--Hb_132517_010 Hb_000723_060 Hb_000723_060 Hb_024357_010--Hb_000723_060 Hb_013607_010 Hb_013607_010 Hb_127400_010--Hb_013607_010 Hb_019654_010 Hb_019654_010 Hb_127400_010--Hb_019654_010 Hb_041145_010 Hb_041145_010 Hb_127400_010--Hb_041145_010 Hb_001568_120 Hb_001568_120 Hb_127400_010--Hb_001568_120 Hb_000133_060 Hb_000133_060 Hb_127400_010--Hb_000133_060 Hb_000101_140 Hb_000101_140 Hb_002239_030--Hb_000101_140 Hb_002239_030--Hb_000723_060 Hb_002248_090 Hb_002248_090 Hb_002239_030--Hb_002248_090 Hb_002239_030--Hb_024857_010 Hb_000656_370 Hb_000656_370 Hb_002239_030--Hb_000656_370 Hb_060237_010 Hb_060237_010 Hb_002239_030--Hb_060237_010 Hb_002236_020 Hb_002236_020 Hb_024857_010--Hb_002236_020 Hb_087468_010 Hb_087468_010 Hb_024857_010--Hb_087468_010 Hb_024857_010--Hb_000656_370 Hb_000252_190 Hb_000252_190 Hb_024857_010--Hb_000252_190 Hb_024857_010--Hb_000101_140 Hb_001608_030 Hb_001608_030 Hb_007137_030--Hb_001608_030 Hb_093177_010 Hb_093177_010 Hb_007137_030--Hb_093177_010 Hb_042553_010 Hb_042553_010 Hb_007137_030--Hb_042553_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_115158_010 Hb_115158_010 Hb_007137_030--Hb_115158_010 Hb_001504_270 Hb_001504_270 Hb_006911_060--Hb_001504_270 Hb_000397_090 Hb_000397_090 Hb_006911_060--Hb_000397_090 Hb_006052_040 Hb_006052_040 Hb_006911_060--Hb_006052_040 Hb_012702_010 Hb_012702_010 Hb_006911_060--Hb_012702_010 Hb_009247_020 Hb_009247_020 Hb_006911_060--Hb_009247_020 Hb_183539_010 Hb_183539_010 Hb_006911_060--Hb_183539_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.832198 156.548 19.8199 57.4623 10.3376 1.16894
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 18.4482 3.22917

CAGE analysis