Hb_133636_010

Information

Type -
Description -
Location Contig133636: 433-791
Sequence    

Annotation

kegg
ID brp:103872466
description proline-rich receptor-like protein kinase PERK15
nr
ID XP_009149119.1
description PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
swissprot
ID -
description -
trembl
ID M4FCS5
description Uncharacterized protein OS=Brassica rapa subsp. pekinensis GN=Bra038894 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133636_010 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Brassica rapa]
2 Hb_003299_010 0.1518380677 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_000844_010 0.1640507388 - - PREDICTED: lysine histidine transporter-like 8 [Jatropha curcas]
4 Hb_002783_320 0.1663074769 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
5 Hb_005157_010 0.1706824982 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
6 Hb_011909_030 0.1730146814 - - hypothetical protein JCGZ_00732 [Jatropha curcas]
7 Hb_007773_030 0.1733290224 - - -
8 Hb_000088_160 0.1738143372 - - PREDICTED: uncharacterized protein LOC105629775 [Jatropha curcas]
9 Hb_003376_340 0.1742529392 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000141_220 0.1842950911 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
11 Hb_000106_070 0.1897266589 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
12 Hb_000670_110 0.1899227793 - - l-asparaginase, putative [Ricinus communis]
13 Hb_001454_340 0.1906980276 - - ATDI21 [Manihot esculenta]
14 Hb_000116_390 0.1921538139 - - Mlo protein [Hevea brasiliensis]
15 Hb_011970_040 0.1937445856 - - conserved hypothetical protein [Ricinus communis]
16 Hb_033006_040 0.1942354118 - - sulfate transporter, putative [Ricinus communis]
17 Hb_141142_010 0.1950889741 - - hypothetical protein JCGZ_21320 [Jatropha curcas]
18 Hb_011618_040 0.1950990312 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000260_320 0.1996104554 - - PREDICTED: uncharacterized protein LOC105649058 [Jatropha curcas]
20 Hb_003175_020 0.2004720477 - - homeobox protein knotted-1, putative [Ricinus communis]

Gene co-expression network

sample Hb_133636_010 Hb_133636_010 Hb_003299_010 Hb_003299_010 Hb_133636_010--Hb_003299_010 Hb_000844_010 Hb_000844_010 Hb_133636_010--Hb_000844_010 Hb_002783_320 Hb_002783_320 Hb_133636_010--Hb_002783_320 Hb_005157_010 Hb_005157_010 Hb_133636_010--Hb_005157_010 Hb_011909_030 Hb_011909_030 Hb_133636_010--Hb_011909_030 Hb_007773_030 Hb_007773_030 Hb_133636_010--Hb_007773_030 Hb_003299_010--Hb_005157_010 Hb_000685_060 Hb_000685_060 Hb_003299_010--Hb_000685_060 Hb_000189_120 Hb_000189_120 Hb_003299_010--Hb_000189_120 Hb_001584_010 Hb_001584_010 Hb_003299_010--Hb_001584_010 Hb_003504_040 Hb_003504_040 Hb_003299_010--Hb_003504_040 Hb_000141_220 Hb_000141_220 Hb_000844_010--Hb_000141_220 Hb_017417_030 Hb_017417_030 Hb_000844_010--Hb_017417_030 Hb_164010_090 Hb_164010_090 Hb_000844_010--Hb_164010_090 Hb_141142_010 Hb_141142_010 Hb_000844_010--Hb_141142_010 Hb_135811_060 Hb_135811_060 Hb_000844_010--Hb_135811_060 Hb_010578_050 Hb_010578_050 Hb_002783_320--Hb_010578_050 Hb_000030_260 Hb_000030_260 Hb_002783_320--Hb_000030_260 Hb_000676_030 Hb_000676_030 Hb_002783_320--Hb_000676_030 Hb_017866_020 Hb_017866_020 Hb_002783_320--Hb_017866_020 Hb_011970_040 Hb_011970_040 Hb_002783_320--Hb_011970_040 Hb_004195_170 Hb_004195_170 Hb_002783_320--Hb_004195_170 Hb_005841_080 Hb_005841_080 Hb_005157_010--Hb_005841_080 Hb_005157_010--Hb_000685_060 Hb_001951_030 Hb_001951_030 Hb_005157_010--Hb_001951_030 Hb_005157_010--Hb_003504_040 Hb_106969_010 Hb_106969_010 Hb_011909_030--Hb_106969_010 Hb_046117_050 Hb_046117_050 Hb_011909_030--Hb_046117_050 Hb_000116_390 Hb_000116_390 Hb_011909_030--Hb_000116_390 Hb_001953_130 Hb_001953_130 Hb_011909_030--Hb_001953_130 Hb_003376_340 Hb_003376_340 Hb_011909_030--Hb_003376_340 Hb_000260_320 Hb_000260_320 Hb_011909_030--Hb_000260_320 Hb_007441_060 Hb_007441_060 Hb_007773_030--Hb_007441_060 Hb_007773_030--Hb_010578_050 Hb_000035_300 Hb_000035_300 Hb_007773_030--Hb_000035_300 Hb_007773_030--Hb_002783_320 Hb_007773_030--Hb_001584_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9827 330.532 19.2056 40.2381 7.20946 29.1595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.88003 1.73604 0 240.853 0.516049

CAGE analysis