Hb_133648_010

Information

Type -
Description -
Location Contig133648: 242-940
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09508: 358-753 , PASA_asmbl_09509: 372-993
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133648_010 0.0 - - -
2 Hb_158296_010 0.161306025 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
3 Hb_048183_010 0.169313175 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
4 Hb_097783_010 0.1929818503 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
5 Hb_007416_080 0.1974471569 - - -
6 Hb_000562_010 0.2026117464 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
7 Hb_072290_010 0.2116568809 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
8 Hb_022614_010 0.2127865553 - - -
9 Hb_000164_130 0.2235892834 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
10 Hb_162090_010 0.2243833856 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
11 Hb_003641_010 0.2336153002 - - Pectinesterase-3 precursor, putative [Ricinus communis]
12 Hb_178711_010 0.2368852773 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
13 Hb_017014_020 0.2411219728 - - -
14 Hb_000251_020 0.2416456151 - - hypothetical protein CISIN_1g028541mg [Citrus sinensis]
15 Hb_104169_010 0.2498493941 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_002820_130 0.2514048015 - - -
17 Hb_003531_010 0.2575993947 - - scab resistance family protein [Populus trichocarpa]
18 Hb_157968_010 0.2580477199 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_007575_090 0.2612715078 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
20 Hb_074836_020 0.261411228 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_133648_010 Hb_133648_010 Hb_158296_010 Hb_158296_010 Hb_133648_010--Hb_158296_010 Hb_048183_010 Hb_048183_010 Hb_133648_010--Hb_048183_010 Hb_097783_010 Hb_097783_010 Hb_133648_010--Hb_097783_010 Hb_007416_080 Hb_007416_080 Hb_133648_010--Hb_007416_080 Hb_000562_010 Hb_000562_010 Hb_133648_010--Hb_000562_010 Hb_072290_010 Hb_072290_010 Hb_133648_010--Hb_072290_010 Hb_158296_010--Hb_000562_010 Hb_158296_010--Hb_007416_080 Hb_001208_020 Hb_001208_020 Hb_158296_010--Hb_001208_020 Hb_000164_130 Hb_000164_130 Hb_158296_010--Hb_000164_130 Hb_000244_140 Hb_000244_140 Hb_158296_010--Hb_000244_140 Hb_048183_010--Hb_007416_080 Hb_048183_010--Hb_072290_010 Hb_001708_010 Hb_001708_010 Hb_048183_010--Hb_001708_010 Hb_178711_010 Hb_178711_010 Hb_048183_010--Hb_178711_010 Hb_048183_010--Hb_000164_130 Hb_000343_170 Hb_000343_170 Hb_097783_010--Hb_000343_170 Hb_000085_120 Hb_000085_120 Hb_097783_010--Hb_000085_120 Hb_003641_010 Hb_003641_010 Hb_097783_010--Hb_003641_010 Hb_002820_130 Hb_002820_130 Hb_097783_010--Hb_002820_130 Hb_007545_200 Hb_007545_200 Hb_097783_010--Hb_007545_200 Hb_007416_080--Hb_000562_010 Hb_007416_080--Hb_000164_130 Hb_007416_080--Hb_001208_020 Hb_000562_010--Hb_001208_020 Hb_001248_180 Hb_001248_180 Hb_000562_010--Hb_001248_180 Hb_000562_010--Hb_000164_130 Hb_104169_010 Hb_104169_010 Hb_072290_010--Hb_104169_010 Hb_004705_090 Hb_004705_090 Hb_072290_010--Hb_004705_090 Hb_002984_020 Hb_002984_020 Hb_072290_010--Hb_002984_020 Hb_072290_010--Hb_178711_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47428 11.4966 3.86535 63.5261 0 18.3321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33874 1.08164 0 1.00502 0

CAGE analysis