Hb_133702_030

Information

Type -
Description -
Location Contig133702: 16350-20142
Sequence    

Annotation

kegg
ID rcu:RCOM_0659660
description carrier, putative
nr
ID XP_012078890.1
description PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
swissprot
ID Q9LVM5
description Uric acid degradation bifunctional protein TTL OS=Arabidopsis thaliana GN=TTL PE=1 SV=1
trembl
ID B9SKJ6
description Carrier, putative OS=Ricinus communis GN=RCOM_0659660 PE=4 SV=1
Gene Ontology
ID GO:0044444
description transthyretin-like s-allantoin synthase protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09514: 14981-15710 , PASA_asmbl_09515: 16385-20103
cDNA
(Sanger)
(ID:Location)		 032_K05.ab1: 16375-18812

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133702_030 0.0 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
2 Hb_001733_030 0.0597853743 - - PREDICTED: uncharacterized protein LOC100261386 isoform X2 [Vitis vinifera]
3 Hb_000182_040 0.0604055908 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
4 Hb_001454_370 0.066381005 - - PREDICTED: glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Jatropha curcas]
5 Hb_000120_280 0.0702777954 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
6 Hb_007657_020 0.0707947349 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
7 Hb_000603_030 0.0722367242 - - Ribonuclease III, putative [Ricinus communis]
8 Hb_016777_040 0.0734380222 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
9 Hb_028872_070 0.0741367962 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
10 Hb_002681_090 0.0746079029 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
11 Hb_000398_080 0.0758733285 - - tip120, putative [Ricinus communis]
12 Hb_003645_060 0.0795932301 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
13 Hb_000130_160 0.0806947759 - - PREDICTED: protein DJ-1 homolog B-like [Jatropha curcas]
14 Hb_001235_140 0.0816764005 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
15 Hb_000130_020 0.0821231174 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
16 Hb_004109_370 0.0829380591 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
17 Hb_002805_190 0.0838479111 - - spliceosome associated protein, putative [Ricinus communis]
18 Hb_002686_040 0.0850007627 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
19 Hb_004267_040 0.0860299633 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
20 Hb_003436_020 0.0876517415 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_133702_030 Hb_133702_030 Hb_001733_030 Hb_001733_030 Hb_133702_030--Hb_001733_030 Hb_000182_040 Hb_000182_040 Hb_133702_030--Hb_000182_040 Hb_001454_370 Hb_001454_370 Hb_133702_030--Hb_001454_370 Hb_000120_280 Hb_000120_280 Hb_133702_030--Hb_000120_280 Hb_007657_020 Hb_007657_020 Hb_133702_030--Hb_007657_020 Hb_000603_030 Hb_000603_030 Hb_133702_030--Hb_000603_030 Hb_000365_030 Hb_000365_030 Hb_001733_030--Hb_000365_030 Hb_004109_370 Hb_004109_370 Hb_001733_030--Hb_004109_370 Hb_004096_190 Hb_004096_190 Hb_001733_030--Hb_004096_190 Hb_001733_030--Hb_001454_370 Hb_006501_010 Hb_006501_010 Hb_001733_030--Hb_006501_010 Hb_002217_030 Hb_002217_030 Hb_000182_040--Hb_002217_030 Hb_000182_040--Hb_007657_020 Hb_000089_120 Hb_000089_120 Hb_000182_040--Hb_000089_120 Hb_000182_040--Hb_000120_280 Hb_000398_080 Hb_000398_080 Hb_000182_040--Hb_000398_080 Hb_000505_020 Hb_000505_020 Hb_001454_370--Hb_000505_020 Hb_004096_070 Hb_004096_070 Hb_001454_370--Hb_004096_070 Hb_002078_100 Hb_002078_100 Hb_001454_370--Hb_002078_100 Hb_001235_140 Hb_001235_140 Hb_001454_370--Hb_001235_140 Hb_001935_110 Hb_001935_110 Hb_001454_370--Hb_001935_110 Hb_004267_040 Hb_004267_040 Hb_000120_280--Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_000120_280--Hb_000011_100 Hb_000477_050 Hb_000477_050 Hb_000120_280--Hb_000477_050 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000120_280--Hb_001009_320 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090 Hb_007657_020--Hb_000398_080 Hb_007657_020--Hb_002681_090 Hb_000261_240 Hb_000261_240 Hb_007657_020--Hb_000261_240 Hb_002311_290 Hb_002311_290 Hb_007657_020--Hb_002311_290 Hb_007657_020--Hb_000603_030 Hb_007657_020--Hb_000089_120 Hb_000603_030--Hb_000398_080 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_000603_030--Hb_002681_090 Hb_000563_130 Hb_000563_130 Hb_000603_030--Hb_000563_130 Hb_000603_030--Hb_004267_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3837 24.2496 30.8679 28.1388 30.5099 30.6645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.313 9.96032 16.254 40.8572 20.6848

CAGE analysis