Hb_133845_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig133845: 3535-4844
Sequence    

Annotation

kegg
ID rcu:RCOM_1326820
description transcription factor, putative
nr
ID XP_002520049.1
description transcription factor, putative [Ricinus communis]
swissprot
ID F4JN35
description Protein NTM1-like 9 OS=Arabidopsis thaliana GN=NTL9 PE=1 SV=1
trembl
ID B9S230
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1326820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133845_010 0.0 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
2 Hb_018043_010 0.112450702 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
3 Hb_000110_330 0.1138250346 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
4 Hb_007407_010 0.1150165455 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 74 [Populus euphratica]
5 Hb_012404_050 0.118734989 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
6 Hb_000133_060 0.1198324294 - - PREDICTED: protein YLS9-like [Jatropha curcas]
7 Hb_041145_010 0.1268238784 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
8 Hb_005357_270 0.1348449786 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
9 Hb_012545_080 0.144839641 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
10 Hb_022206_030 0.1451224148 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
11 Hb_001628_030 0.1470305931 - - PREDICTED: uncharacterized protein LOC105629266 isoform X1 [Jatropha curcas]
12 Hb_019654_010 0.1490843785 - - multicopper oxidase, putative [Ricinus communis]
13 Hb_009083_010 0.1494435136 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
14 Hb_127400_010 0.1528198838 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
15 Hb_009683_010 0.1583752018 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_001568_120 0.1641674827 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
17 Hb_005605_030 0.1669318696 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
18 Hb_006634_080 0.1675612906 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
19 Hb_001922_100 0.1685177297 - - S-type anion channel SLAH2 [Triticum urartu]
20 Hb_000302_150 0.1688330599 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]

Gene co-expression network

sample Hb_133845_010 Hb_133845_010 Hb_018043_010 Hb_018043_010 Hb_133845_010--Hb_018043_010 Hb_000110_330 Hb_000110_330 Hb_133845_010--Hb_000110_330 Hb_007407_010 Hb_007407_010 Hb_133845_010--Hb_007407_010 Hb_012404_050 Hb_012404_050 Hb_133845_010--Hb_012404_050 Hb_000133_060 Hb_000133_060 Hb_133845_010--Hb_000133_060 Hb_041145_010 Hb_041145_010 Hb_133845_010--Hb_041145_010 Hb_018043_010--Hb_007407_010 Hb_018043_010--Hb_000133_060 Hb_001922_100 Hb_001922_100 Hb_018043_010--Hb_001922_100 Hb_019654_010 Hb_019654_010 Hb_018043_010--Hb_019654_010 Hb_009683_010 Hb_009683_010 Hb_018043_010--Hb_009683_010 Hb_000110_330--Hb_012404_050 Hb_000110_330--Hb_041145_010 Hb_012545_080 Hb_012545_080 Hb_000110_330--Hb_012545_080 Hb_000110_330--Hb_007407_010 Hb_005357_270 Hb_005357_270 Hb_000110_330--Hb_005357_270 Hb_000110_330--Hb_000133_060 Hb_007407_010--Hb_000133_060 Hb_005605_030 Hb_005605_030 Hb_007407_010--Hb_005605_030 Hb_002205_260 Hb_002205_260 Hb_007407_010--Hb_002205_260 Hb_007407_010--Hb_009683_010 Hb_007407_010--Hb_012545_080 Hb_055147_010 Hb_055147_010 Hb_012404_050--Hb_055147_010 Hb_012404_050--Hb_012545_080 Hb_012404_050--Hb_007407_010 Hb_004785_120 Hb_004785_120 Hb_012404_050--Hb_004785_120 Hb_000133_060--Hb_002205_260 Hb_000133_060--Hb_012545_080 Hb_019961_010 Hb_019961_010 Hb_000133_060--Hb_019961_010 Hb_174380_010 Hb_174380_010 Hb_000133_060--Hb_174380_010 Hb_117127_010 Hb_117127_010 Hb_041145_010--Hb_117127_010 Hb_001568_120 Hb_001568_120 Hb_041145_010--Hb_001568_120 Hb_003602_090 Hb_003602_090 Hb_041145_010--Hb_003602_090 Hb_127400_010 Hb_127400_010 Hb_041145_010--Hb_127400_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0439285 3.99889 1.57021 1.29892 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0503003 0.0395612 0 0.76354 0

CAGE analysis