Hb_134015_010

Information

Type -
Description -
Location Contig134015: 270-602
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13360g
description POPTRDRAFT_876512; hypothetical protein
nr
ID XP_002312977.2
description hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
swissprot
ID Q54R82
description Mitogen-activated protein kinase kinase kinase A OS=Dictyostelium discoideum GN=mkkA PE=1 SV=2
trembl
ID B9HR94
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13360g PE=4 SV=2
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134015_010 0.0 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
2 Hb_002311_060 0.2365511334 - - PREDICTED: protein trichome birefringence-like 4 [Jatropha curcas]
3 Hb_004228_090 0.2813264849 - - -
4 Hb_021576_020 0.2944950718 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
5 Hb_000080_160 0.2969705863 - - Peroxin 13 [Theobroma cacao]
6 Hb_079751_010 0.3135291982 - - r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_032717_070 0.332305593 - - PREDICTED: mucin-2-like [Jatropha curcas]
8 Hb_002631_190 0.3326858964 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
9 Hb_001554_010 0.3419355232 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
10 Hb_000820_160 0.3445189834 - - -
11 Hb_001369_380 0.3462325712 - - F-box family protein, putative [Theobroma cacao]
12 Hb_171065_010 0.3467363984 - - Ribonuclease H protein [Theobroma cacao]
13 Hb_007810_090 0.3506980789 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
14 Hb_002722_010 0.3546732477 - - Disease resistance response protein, putative [Ricinus communis]
15 Hb_006726_010 0.3690014543 - - PREDICTED: uncharacterized protein K02A2.6-like [Nicotiana sylvestris]
16 Hb_000544_160 0.3704586767 - - PREDICTED: phosphomethylethanolamine N-methyltransferase-like [Nelumbo nucifera]
17 Hb_000107_470 0.3722048692 - - cellulose synthase, putative [Ricinus communis]
18 Hb_008778_010 0.3764907561 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000982_140 0.3777767428 - - histidine kinase 1 plant, putative [Ricinus communis]
20 Hb_003680_210 0.3782598002 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]

Gene co-expression network

sample Hb_134015_010 Hb_134015_010 Hb_002311_060 Hb_002311_060 Hb_134015_010--Hb_002311_060 Hb_004228_090 Hb_004228_090 Hb_134015_010--Hb_004228_090 Hb_021576_020 Hb_021576_020 Hb_134015_010--Hb_021576_020 Hb_000080_160 Hb_000080_160 Hb_134015_010--Hb_000080_160 Hb_079751_010 Hb_079751_010 Hb_134015_010--Hb_079751_010 Hb_032717_070 Hb_032717_070 Hb_134015_010--Hb_032717_070 Hb_002311_060--Hb_004228_090 Hb_008778_010 Hb_008778_010 Hb_002311_060--Hb_008778_010 Hb_002311_060--Hb_021576_020 Hb_003680_210 Hb_003680_210 Hb_002311_060--Hb_003680_210 Hb_000816_270 Hb_000816_270 Hb_002311_060--Hb_000816_270 Hb_004228_090--Hb_000816_270 Hb_004228_090--Hb_008778_010 Hb_006911_050 Hb_006911_050 Hb_004228_090--Hb_006911_050 Hb_001554_010 Hb_001554_010 Hb_004228_090--Hb_001554_010 Hb_021576_020--Hb_001554_010 Hb_002998_070 Hb_002998_070 Hb_021576_020--Hb_002998_070 Hb_007904_240 Hb_007904_240 Hb_021576_020--Hb_007904_240 Hb_000069_770 Hb_000069_770 Hb_021576_020--Hb_000069_770 Hb_005306_010 Hb_005306_010 Hb_021576_020--Hb_005306_010 Hb_000926_100 Hb_000926_100 Hb_021576_020--Hb_000926_100 Hb_002722_010 Hb_002722_010 Hb_000080_160--Hb_002722_010 Hb_006472_080 Hb_006472_080 Hb_000080_160--Hb_006472_080 Hb_021650_020 Hb_021650_020 Hb_000080_160--Hb_021650_020 Hb_000618_090 Hb_000618_090 Hb_000080_160--Hb_000618_090 Hb_003994_130 Hb_003994_130 Hb_000080_160--Hb_003994_130 Hb_001021_070 Hb_001021_070 Hb_000080_160--Hb_001021_070 Hb_010515_030 Hb_010515_030 Hb_079751_010--Hb_010515_030 Hb_000215_370 Hb_000215_370 Hb_079751_010--Hb_000215_370 Hb_079751_010--Hb_002722_010 Hb_000544_160 Hb_000544_160 Hb_079751_010--Hb_000544_160 Hb_079751_010--Hb_000080_160 Hb_005062_080 Hb_005062_080 Hb_032717_070--Hb_005062_080 Hb_000038_120 Hb_000038_120 Hb_032717_070--Hb_000038_120 Hb_009571_010 Hb_009571_010 Hb_032717_070--Hb_009571_010 Hb_032717_070--Hb_021576_020 Hb_005725_050 Hb_005725_050 Hb_032717_070--Hb_005725_050 Hb_007919_020 Hb_007919_020 Hb_032717_070--Hb_007919_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244573 0 0.495701 0.68637 0.364823 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.686028 0.414306 0

CAGE analysis