Hb_134017_010

Information

Type -
Description -
Location Contig134017: 26363-28738
Sequence    

Annotation

kegg
ID rcu:RCOM_0737170
description kinase, putative
nr
ID XP_002527556.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9LMP1
description Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1
trembl
ID B9SNI7
description Kinase, putative OS=Ricinus communis GN=RCOM_0737170 PE=3 SV=1
Gene Ontology
ID GO:0004672
description wall-associated receptor kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09638: 26331-26664 , PASA_asmbl_09639: 26880-27574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134017_010 0.0 - - kinase, putative [Ricinus communis]
2 Hb_003439_020 0.0733178704 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
3 Hb_003376_200 0.0757846848 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_003439_090 0.0783193151 - - kinase, putative [Ricinus communis]
5 Hb_074312_020 0.0848503749 - - cytochrome P450, putative [Ricinus communis]
6 Hb_130967_010 0.0854513289 - - UDP-glucosyltransferase, putative [Ricinus communis]
7 Hb_003430_020 0.0857854915 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
8 Hb_009581_050 0.0872168523 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
9 Hb_001862_060 0.0876906799 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
10 Hb_000407_080 0.0882577796 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
11 Hb_000255_020 0.0946248419 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
12 Hb_013914_020 0.1005795713 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_000586_100 0.1063937673 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000335_050 0.1090709051 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
15 Hb_002007_140 0.1123006875 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
16 Hb_000045_180 0.1126663174 - - aquaporin PIP1 [Hevea brasiliensis]
17 Hb_012807_060 0.1165822709 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_009581_040 0.1192226065 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
19 Hb_006364_020 0.1192666715 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
20 Hb_094637_010 0.1195779994 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]

Gene co-expression network

sample Hb_134017_010 Hb_134017_010 Hb_003439_020 Hb_003439_020 Hb_134017_010--Hb_003439_020 Hb_003376_200 Hb_003376_200 Hb_134017_010--Hb_003376_200 Hb_003439_090 Hb_003439_090 Hb_134017_010--Hb_003439_090 Hb_074312_020 Hb_074312_020 Hb_134017_010--Hb_074312_020 Hb_130967_010 Hb_130967_010 Hb_134017_010--Hb_130967_010 Hb_003430_020 Hb_003430_020 Hb_134017_010--Hb_003430_020 Hb_003439_020--Hb_074312_020 Hb_001862_060 Hb_001862_060 Hb_003439_020--Hb_001862_060 Hb_000255_020 Hb_000255_020 Hb_003439_020--Hb_000255_020 Hb_003439_020--Hb_003430_020 Hb_084127_010 Hb_084127_010 Hb_003439_020--Hb_084127_010 Hb_003376_200--Hb_074312_020 Hb_004447_020 Hb_004447_020 Hb_003376_200--Hb_004447_020 Hb_003376_200--Hb_001862_060 Hb_000407_080 Hb_000407_080 Hb_003376_200--Hb_000407_080 Hb_008406_020 Hb_008406_020 Hb_003376_200--Hb_008406_020 Hb_000586_100 Hb_000586_100 Hb_003439_090--Hb_000586_100 Hb_013914_020 Hb_013914_020 Hb_003439_090--Hb_013914_020 Hb_000045_180 Hb_000045_180 Hb_003439_090--Hb_000045_180 Hb_003439_090--Hb_003430_020 Hb_003439_090--Hb_000407_080 Hb_074312_020--Hb_001862_060 Hb_046101_010 Hb_046101_010 Hb_074312_020--Hb_046101_010 Hb_002276_100 Hb_002276_100 Hb_074312_020--Hb_002276_100 Hb_001369_070 Hb_001369_070 Hb_074312_020--Hb_001369_070 Hb_003788_010 Hb_003788_010 Hb_130967_010--Hb_003788_010 Hb_006364_020 Hb_006364_020 Hb_130967_010--Hb_006364_020 Hb_130967_010--Hb_000586_100 Hb_130967_010--Hb_003439_090 Hb_002970_070 Hb_002970_070 Hb_130967_010--Hb_002970_070 Hb_009581_040 Hb_009581_040 Hb_003430_020--Hb_009581_040 Hb_009581_050 Hb_009581_050 Hb_003430_020--Hb_009581_050 Hb_005183_200 Hb_005183_200 Hb_003430_020--Hb_005183_200 Hb_012807_060 Hb_012807_060 Hb_003430_020--Hb_012807_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.86977 0.463343 1.61052 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.78026 0.47374

CAGE analysis