Hb_134022_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig134022: 499-1116
Sequence    

Annotation

kegg
ID pmum:103342710
description disease resistance protein RPM1-like
nr
ID XP_012077051.1
description PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID A0A067LB31
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17219 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134022_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
2 Hb_004724_300 0.0802940157 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
3 Hb_008810_030 0.0825921327 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
4 Hb_000402_180 0.0872620486 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
5 Hb_036492_020 0.0903145575 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
6 Hb_001821_050 0.091804594 - - hypothetical protein CICLE_v10032084mg [Citrus clementina]
7 Hb_004393_030 0.0967389989 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
8 Hb_002110_050 0.097442291 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004112_050 0.1014157301 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_002218_080 0.1031027001 - - Ankyrin repeat family protein, putative [Theobroma cacao]
11 Hb_070613_010 0.1035663669 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_001660_130 0.1090161557 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
13 Hb_007102_010 0.1141587113 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
14 Hb_021254_020 0.1148047117 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_007007_030 0.1179163784 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012799_040 0.1181227522 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
17 Hb_003929_040 0.1186830027 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
18 Hb_004899_360 0.1206482864 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_002548_020 0.1230524779 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
20 Hb_002725_080 0.123281602 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_134022_010 Hb_134022_010 Hb_004724_300 Hb_004724_300 Hb_134022_010--Hb_004724_300 Hb_008810_030 Hb_008810_030 Hb_134022_010--Hb_008810_030 Hb_000402_180 Hb_000402_180 Hb_134022_010--Hb_000402_180 Hb_036492_020 Hb_036492_020 Hb_134022_010--Hb_036492_020 Hb_001821_050 Hb_001821_050 Hb_134022_010--Hb_001821_050 Hb_004393_030 Hb_004393_030 Hb_134022_010--Hb_004393_030 Hb_004724_300--Hb_001821_050 Hb_002725_080 Hb_002725_080 Hb_004724_300--Hb_002725_080 Hb_007102_010 Hb_007102_010 Hb_004724_300--Hb_007102_010 Hb_004112_050 Hb_004112_050 Hb_004724_300--Hb_004112_050 Hb_001677_120 Hb_001677_120 Hb_004724_300--Hb_001677_120 Hb_008810_030--Hb_004393_030 Hb_021254_020 Hb_021254_020 Hb_008810_030--Hb_021254_020 Hb_004899_360 Hb_004899_360 Hb_008810_030--Hb_004899_360 Hb_000032_090 Hb_000032_090 Hb_008810_030--Hb_000032_090 Hb_004109_240 Hb_004109_240 Hb_008810_030--Hb_004109_240 Hb_000402_180--Hb_036492_020 Hb_003929_040 Hb_003929_040 Hb_000402_180--Hb_003929_040 Hb_070613_010 Hb_070613_010 Hb_000402_180--Hb_070613_010 Hb_001660_130 Hb_001660_130 Hb_000402_180--Hb_001660_130 Hb_000402_180--Hb_008810_030 Hb_006358_030 Hb_006358_030 Hb_036492_020--Hb_006358_030 Hb_000656_260 Hb_000656_260 Hb_036492_020--Hb_000656_260 Hb_036492_020--Hb_003929_040 Hb_152414_010 Hb_152414_010 Hb_036492_020--Hb_152414_010 Hb_001821_050--Hb_007102_010 Hb_001821_050--Hb_001677_120 Hb_004837_110 Hb_004837_110 Hb_001821_050--Hb_004837_110 Hb_002375_080 Hb_002375_080 Hb_001821_050--Hb_002375_080 Hb_004393_030--Hb_021254_020 Hb_004393_030--Hb_000032_090 Hb_000985_140 Hb_000985_140 Hb_004393_030--Hb_000985_140 Hb_004393_030--Hb_001660_130 Hb_007007_030 Hb_007007_030 Hb_004393_030--Hb_007007_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.89533 2.06114 1.56884 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.131191 1.23681

CAGE analysis