Hb_134226_010

Information

Type -
Description -
Location Contig134226: 6421-8299
Sequence    

Annotation

kegg
ID rcu:RCOM_1433250
description 40S ribosomal protein S21e, putative
nr
ID XP_002512424.1
description 40S ribosomal protein S21e, putative [Ricinus communis]
swissprot
ID Q3E902
description 40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=1 SV=2
trembl
ID I3NMJ5
description 40S ribosomal protein S21 OS=Hevea brasiliensis GN=RPS21A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s21-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09727: 6431-8323 , PASA_asmbl_09728: 6430-8323 , PASA_asmbl_09729: 6429-8279
cDNA
(Sanger)
(ID:Location)		 001_P20.ab1: 6431-8277 , 004_H02.ab1: 6431-8279 , 005_G02.ab1: 6431-8279 , 011_C08.ab1: 6431-8322 , 015_O09.ab1: 6431-8279 , 019_K01.ab1: 6429-8279 , 020_P15.ab1: 6431-8279 , 022_N05.ab1: 6532-8270 , 030_I17.ab1: 6431-8279 , 032_B08.ab1: 6430-8277 , 035_J21.ab1: 6430-8279 , 037_I04.ab1: 6431-8241 , 039_A06.ab1: 6431-8241 , 039_K05.ab1: 6451-8232 , 040_K14.ab1: 6431-8226 , 042_G12.ab1: 6431-8278 , 045_E24.ab1: 6431-8279 , 045_G04.ab1: 6431-8279 , 048_D05.ab1: 6429-8279 , 048_M03.ab1: 6431-8275 , 050_A24.ab1: 6431-8241

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134226_010 0.0 - - 40S ribosomal protein S21e, putative [Ricinus communis]
2 Hb_000847_070 0.0684277623 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
3 Hb_133271_020 0.0838457314 - - prohibitin, putative [Ricinus communis]
4 Hb_118977_020 0.0853470489 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
5 Hb_003688_100 0.0862715172 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
6 Hb_001514_020 0.087210787 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
7 Hb_001221_230 0.0875705135 - - conserved hypothetical protein [Ricinus communis]
8 Hb_034585_030 0.08847065 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
9 Hb_000045_130 0.0885717694 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
10 Hb_031089_010 0.0892472679 - - DNA binding protein, putative [Ricinus communis]
11 Hb_004096_170 0.0906016964 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
12 Hb_004204_030 0.0906624317 - - unknown [Populus trichocarpa]
13 Hb_033491_010 0.0910995989 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
14 Hb_003086_110 0.0914280155 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
15 Hb_157854_010 0.0922193242 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
16 Hb_098709_010 0.0922232856 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
17 Hb_002762_060 0.0925978081 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
18 Hb_002207_100 0.0927732675 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
19 Hb_006637_060 0.0927995254 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
20 Hb_000365_360 0.0933761741 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_134226_010 Hb_134226_010 Hb_000847_070 Hb_000847_070 Hb_134226_010--Hb_000847_070 Hb_133271_020 Hb_133271_020 Hb_134226_010--Hb_133271_020 Hb_118977_020 Hb_118977_020 Hb_134226_010--Hb_118977_020 Hb_003688_100 Hb_003688_100 Hb_134226_010--Hb_003688_100 Hb_001514_020 Hb_001514_020 Hb_134226_010--Hb_001514_020 Hb_001221_230 Hb_001221_230 Hb_134226_010--Hb_001221_230 Hb_004096_170 Hb_004096_170 Hb_000847_070--Hb_004096_170 Hb_000847_070--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_000847_070--Hb_004502_030 Hb_007992_030 Hb_007992_030 Hb_000847_070--Hb_007992_030 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_158092_070 Hb_158092_070 Hb_133271_020--Hb_158092_070 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_000975_290 Hb_000975_290 Hb_133271_020--Hb_000975_290 Hb_001030_120 Hb_001030_120 Hb_133271_020--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130 Hb_003086_110 Hb_003086_110 Hb_118977_020--Hb_003086_110 Hb_007166_050 Hb_007166_050 Hb_118977_020--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_118977_020--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_118977_020--Hb_000617_320 Hb_001437_040 Hb_001437_040 Hb_118977_020--Hb_001437_040 Hb_157854_010 Hb_157854_010 Hb_118977_020--Hb_157854_010 Hb_011794_090 Hb_011794_090 Hb_003688_100--Hb_011794_090 Hb_003688_100--Hb_001514_020 Hb_004722_060 Hb_004722_060 Hb_003688_100--Hb_004722_060 Hb_010449_020 Hb_010449_020 Hb_003688_100--Hb_010449_020 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_005489_130 Hb_005489_130 Hb_003688_100--Hb_005489_130 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_001514_020--Hb_004502_030 Hb_001514_020--Hb_007992_030 Hb_001623_370 Hb_001623_370 Hb_001514_020--Hb_001623_370 Hb_000035_380 Hb_000035_380 Hb_001221_230--Hb_000035_380 Hb_000317_430 Hb_000317_430 Hb_001221_230--Hb_000317_430 Hb_010128_130 Hb_010128_130 Hb_001221_230--Hb_010128_130 Hb_000032_570 Hb_000032_570 Hb_001221_230--Hb_000032_570 Hb_001214_130 Hb_001214_130 Hb_001221_230--Hb_001214_130 Hb_001741_140 Hb_001741_140 Hb_001221_230--Hb_001741_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3539.94 736.11 497.538 508.938 3012.2 3791.23
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2998.63 2845.57 1799.88 1182.91 119.151

CAGE analysis