Hb_134310_010

Information

Type -
Description -
Location Contig134310: 17148-26683
Sequence    

Annotation

kegg
ID rcu:RCOM_1095670
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012081222.1
description PREDICTED: ATP-dependent DNA helicase MER3 homolog [Jatropha curcas]
swissprot
ID Q5D892
description ATP-dependent DNA helicase MER3 homolog OS=Arabidopsis thaliana GN=MER3 PE=2 SV=1
trembl
ID A0A067LDM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09567 PE=4 SV=1
Gene Ontology
ID GO:0003676
description probable atp-dependent dna helicase hfm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09741: 20514-20833 , PASA_asmbl_09742: 23485-24641 , PASA_asmbl_09743: 23485-24641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134310_010 0.0 - - PREDICTED: ATP-dependent DNA helicase MER3 homolog [Jatropha curcas]
2 Hb_003906_110 0.1338897484 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
3 Hb_011609_190 0.136577178 - - 14-3-3 protein 2 [Hevea brasiliensis]
4 Hb_004126_010 0.1428798403 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
5 Hb_003906_120 0.1468198729 - - -
6 Hb_002377_040 0.1503089626 - - serine/threonine protein kinase, putative [Ricinus communis]
7 Hb_000264_190 0.150656246 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
8 Hb_002960_120 0.1508585754 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
9 Hb_004738_090 0.152241972 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000327_210 0.1543106694 - - -
11 Hb_014067_010 0.1553641488 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
12 Hb_002172_030 0.1570627808 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
13 Hb_004970_200 0.1570886272 - - serine/threonine-protein kinase, putative [Ricinus communis]
14 Hb_026048_090 0.1575825797 - - conserved hypothetical protein [Ricinus communis]
15 Hb_043959_010 0.1580787274 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]
16 Hb_002067_160 0.1585976551 - - Protein MLO, putative [Ricinus communis]
17 Hb_000117_040 0.1590449799 - - 30S ribosomal protein S6A [Hevea brasiliensis]
18 Hb_002506_010 0.1591038949 - - choline transporter-related family protein [Populus trichocarpa]
19 Hb_009510_030 0.1592973449 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
20 Hb_005730_020 0.1598992332 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_134310_010 Hb_134310_010 Hb_003906_110 Hb_003906_110 Hb_134310_010--Hb_003906_110 Hb_011609_190 Hb_011609_190 Hb_134310_010--Hb_011609_190 Hb_004126_010 Hb_004126_010 Hb_134310_010--Hb_004126_010 Hb_003906_120 Hb_003906_120 Hb_134310_010--Hb_003906_120 Hb_002377_040 Hb_002377_040 Hb_134310_010--Hb_002377_040 Hb_000264_190 Hb_000264_190 Hb_134310_010--Hb_000264_190 Hb_003906_110--Hb_003906_120 Hb_004884_060 Hb_004884_060 Hb_003906_110--Hb_004884_060 Hb_010931_100 Hb_010931_100 Hb_003906_110--Hb_010931_100 Hb_007178_010 Hb_007178_010 Hb_003906_110--Hb_007178_010 Hb_002989_080 Hb_002989_080 Hb_003906_110--Hb_002989_080 Hb_000249_110 Hb_000249_110 Hb_003906_110--Hb_000249_110 Hb_000117_040 Hb_000117_040 Hb_011609_190--Hb_000117_040 Hb_000179_250 Hb_000179_250 Hb_011609_190--Hb_000179_250 Hb_012654_020 Hb_012654_020 Hb_011609_190--Hb_012654_020 Hb_001433_170 Hb_001433_170 Hb_011609_190--Hb_001433_170 Hb_002172_030 Hb_002172_030 Hb_011609_190--Hb_002172_030 Hb_000491_080 Hb_000491_080 Hb_011609_190--Hb_000491_080 Hb_009510_030 Hb_009510_030 Hb_004126_010--Hb_009510_030 Hb_014067_010 Hb_014067_010 Hb_004126_010--Hb_014067_010 Hb_026048_090 Hb_026048_090 Hb_004126_010--Hb_026048_090 Hb_000057_060 Hb_000057_060 Hb_004126_010--Hb_000057_060 Hb_003001_030 Hb_003001_030 Hb_004126_010--Hb_003001_030 Hb_002506_010 Hb_002506_010 Hb_004126_010--Hb_002506_010 Hb_002232_180 Hb_002232_180 Hb_003906_120--Hb_002232_180 Hb_095397_010 Hb_095397_010 Hb_003906_120--Hb_095397_010 Hb_002609_260 Hb_002609_260 Hb_003906_120--Hb_002609_260 Hb_003906_120--Hb_010931_100 Hb_004545_150 Hb_004545_150 Hb_003906_120--Hb_004545_150 Hb_000062_230 Hb_000062_230 Hb_002377_040--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002377_040--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_002377_040--Hb_002044_090 Hb_003352_050 Hb_003352_050 Hb_002377_040--Hb_003352_050 Hb_000028_470 Hb_000028_470 Hb_002377_040--Hb_000028_470 Hb_000085_340 Hb_000085_340 Hb_002377_040--Hb_000085_340 Hb_000264_190--Hb_002609_260 Hb_000264_190--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_000264_190--Hb_000563_540 Hb_005730_020 Hb_005730_020 Hb_000264_190--Hb_005730_020 Hb_000264_190--Hb_009510_030 Hb_002890_220 Hb_002890_220 Hb_000264_190--Hb_002890_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.95963 0.285605 1.78059 0.379673 8.48942 7.24089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.01183 3.48347 6.36589 0.185152 0.0566701

CAGE analysis