Hb_134310_020

Information

Type -
Description -
Location Contig134310: 30911-31108
Sequence    

Annotation

kegg
ID cit:102628200
description putative cytochrome c oxidase subunit 5C-4-like
nr
ID XP_006470279.1
description PREDICTED: putative cytochrome c oxidase subunit 5C-4-like [Citrus sinensis]
swissprot
ID Q9FNE0
description Putative cytochrome c oxidase subunit 5C-4 OS=Arabidopsis thaliana GN=At5g40382 PE=3 SV=1
trembl
ID V4U6T4
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017383mg PE=4 SV=1
Gene Ontology
ID GO:0005746
description cytochrome c oxidase subunit 5c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09745: 30426-31277
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134310_020 0.0 - - PREDICTED: putative cytochrome c oxidase subunit 5C-4-like [Citrus sinensis]
2 Hb_130134_020 0.1576869694 - - -
3 Hb_000617_170 0.1670042492 - - -
4 Hb_115578_010 0.1727217432 - - PREDICTED: prefoldin subunit 1-like [Populus euphratica]
5 Hb_000200_040 0.1808127151 - - -
6 Hb_000295_090 0.1847251876 - - Clathrin light chain 2 [Glycine soja]
7 Hb_000976_030 0.1945546129 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
8 Hb_005933_010 0.1979009536 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
9 Hb_027295_040 0.1985675185 - - hypothetical protein MIMGU_mgv1a017500mg [Erythranthe guttata]
10 Hb_019282_010 0.2029441341 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
11 Hb_130134_030 0.2105225197 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
12 Hb_001722_020 0.2120459823 - - -
13 Hb_000808_240 0.2137559959 - - -
14 Hb_002960_050 0.2202074368 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
15 Hb_000248_010 0.2217999937 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
16 Hb_000295_100 0.2250576284 - - -
17 Hb_178041_010 0.2269345345 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
18 Hb_171788_010 0.2327780675 - - hypothetical protein CISIN_1g007892mg [Citrus sinensis]
19 Hb_088774_010 0.2348778533 - - -
20 Hb_001767_120 0.2366875215 - - -

Gene co-expression network

sample Hb_134310_020 Hb_134310_020 Hb_130134_020 Hb_130134_020 Hb_134310_020--Hb_130134_020 Hb_000617_170 Hb_000617_170 Hb_134310_020--Hb_000617_170 Hb_115578_010 Hb_115578_010 Hb_134310_020--Hb_115578_010 Hb_000200_040 Hb_000200_040 Hb_134310_020--Hb_000200_040 Hb_000295_090 Hb_000295_090 Hb_134310_020--Hb_000295_090 Hb_000976_030 Hb_000976_030 Hb_134310_020--Hb_000976_030 Hb_130134_030 Hb_130134_030 Hb_130134_020--Hb_130134_030 Hb_130134_020--Hb_000295_090 Hb_178041_010 Hb_178041_010 Hb_130134_020--Hb_178041_010 Hb_003376_070 Hb_003376_070 Hb_130134_020--Hb_003376_070 Hb_088428_010 Hb_088428_010 Hb_130134_020--Hb_088428_010 Hb_122567_020 Hb_122567_020 Hb_000617_170--Hb_122567_020 Hb_000617_170--Hb_000976_030 Hb_005933_010 Hb_005933_010 Hb_000617_170--Hb_005933_010 Hb_000248_010 Hb_000248_010 Hb_000617_170--Hb_000248_010 Hb_169170_010 Hb_169170_010 Hb_000617_170--Hb_169170_010 Hb_115578_010--Hb_000295_090 Hb_001385_090 Hb_001385_090 Hb_115578_010--Hb_001385_090 Hb_002249_110 Hb_002249_110 Hb_115578_010--Hb_002249_110 Hb_115578_010--Hb_130134_020 Hb_000059_090 Hb_000059_090 Hb_115578_010--Hb_000059_090 Hb_012807_080 Hb_012807_080 Hb_000200_040--Hb_012807_080 Hb_006455_110 Hb_006455_110 Hb_000200_040--Hb_006455_110 Hb_005965_010 Hb_005965_010 Hb_000200_040--Hb_005965_010 Hb_006455_080 Hb_006455_080 Hb_000200_040--Hb_006455_080 Hb_139859_010 Hb_139859_010 Hb_000200_040--Hb_139859_010 Hb_176117_010 Hb_176117_010 Hb_000200_040--Hb_176117_010 Hb_000295_090--Hb_002249_110 Hb_088774_010 Hb_088774_010 Hb_000295_090--Hb_088774_010 Hb_000295_090--Hb_001385_090 Hb_000523_100 Hb_000523_100 Hb_000295_090--Hb_000523_100 Hb_002960_050 Hb_002960_050 Hb_000976_030--Hb_002960_050 Hb_000976_030--Hb_178041_010 Hb_051437_010 Hb_051437_010 Hb_000976_030--Hb_051437_010 Hb_000976_030--Hb_000248_010 Hb_000976_030--Hb_169170_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
228.844 238.404 19.2814 443.814 775.618 2866.86
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.226 235.116 103.075 152.485 2.73822

CAGE analysis