Hb_134312_010

Information

Type -
Description -
Location Contig134312: 3-374
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13360g
description POPTRDRAFT_876512; hypothetical protein
nr
ID XP_011004631.1
description PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
swissprot
ID Q12222
description Glycogen synthase kinase-3 homolog YGK3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGK3 PE=1 SV=1
trembl
ID B9HR94
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13360g PE=4 SV=2
Gene Ontology
ID GO:0000166
description mitogen-activated protein kinase kinase kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134312_010 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
2 Hb_004640_040 0.014785929 - - -
3 Hb_087008_010 0.0247414443 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_000189_060 0.2216435379 - - PREDICTED: uncharacterized protein LOC105637477 [Jatropha curcas]
5 Hb_000513_080 0.2350683155 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 43 [Jatropha curcas]
6 Hb_000123_100 0.2715035215 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
7 Hb_005892_070 0.2820609845 - - Ribosomal L11 methyltransferase [Gossypium arboreum]
8 Hb_059301_010 0.3172593672 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
9 Hb_005867_010 0.3503172024 - - -
10 Hb_001364_020 0.3503541178 - - -
11 Hb_000525_060 0.3510919622 - - PREDICTED: uncharacterized protein LOC104211307 [Nicotiana sylvestris]
12 Hb_000038_160 0.3523935118 - - putative gag protein [Coffea canephora]
13 Hb_140049_070 0.3525009453 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002805_320 0.3529367956 - - -
15 Hb_002163_060 0.3545231069 - - -
16 Hb_071379_010 0.3590416862 - - PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
17 Hb_003740_010 0.3683020609 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000905_070 0.3707910821 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
19 Hb_027393_020 0.3730471709 - - -
20 Hb_004324_380 0.3769979021 - - -

Gene co-expression network

sample Hb_134312_010 Hb_134312_010 Hb_004640_040 Hb_004640_040 Hb_134312_010--Hb_004640_040 Hb_087008_010 Hb_087008_010 Hb_134312_010--Hb_087008_010 Hb_000189_060 Hb_000189_060 Hb_134312_010--Hb_000189_060 Hb_000513_080 Hb_000513_080 Hb_134312_010--Hb_000513_080 Hb_000123_100 Hb_000123_100 Hb_134312_010--Hb_000123_100 Hb_005892_070 Hb_005892_070 Hb_134312_010--Hb_005892_070 Hb_004640_040--Hb_087008_010 Hb_004640_040--Hb_000189_060 Hb_004640_040--Hb_000513_080 Hb_004640_040--Hb_000123_100 Hb_004640_040--Hb_005892_070 Hb_087008_010--Hb_000189_060 Hb_087008_010--Hb_000513_080 Hb_087008_010--Hb_005892_070 Hb_087008_010--Hb_000123_100 Hb_000189_060--Hb_000513_080 Hb_071379_010 Hb_071379_010 Hb_000189_060--Hb_071379_010 Hb_005743_090 Hb_005743_090 Hb_000189_060--Hb_005743_090 Hb_000513_080--Hb_071379_010 Hb_000513_080--Hb_000123_100 Hb_113823_010 Hb_113823_010 Hb_000123_100--Hb_113823_010 Hb_059301_010 Hb_059301_010 Hb_000123_100--Hb_059301_010 Hb_160233_020 Hb_160233_020 Hb_000123_100--Hb_160233_020 Hb_004800_050 Hb_004800_050 Hb_000123_100--Hb_004800_050 Hb_001214_170 Hb_001214_170 Hb_000123_100--Hb_001214_170 Hb_000905_070 Hb_000905_070 Hb_005892_070--Hb_000905_070 Hb_000153_040 Hb_000153_040 Hb_005892_070--Hb_000153_040 Hb_001125_030 Hb_001125_030 Hb_005892_070--Hb_001125_030 Hb_002759_130 Hb_002759_130 Hb_005892_070--Hb_002759_130 Hb_000200_060 Hb_000200_060 Hb_005892_070--Hb_000200_060 Hb_000345_480 Hb_000345_480 Hb_005892_070--Hb_000345_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0967021 0 0.0829892 0 0.189421 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis