Hb_134364_010

Information

Type -
Description -
Location Contig134364: 5506-17045
Sequence    

Annotation

kegg
ID rcu:RCOM_0863470
description transcriptional adaptor, putative
nr
ID XP_012082181.1
description PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
swissprot
ID Q75LL6
description Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica GN=ADA2 PE=2 SV=2
trembl
ID A0A067JZB0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19399 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcriptional adapter ada2b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09752: 5868-6077 , PASA_asmbl_09753: 6510-17040 , PASA_asmbl_09754: 6510-17040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134364_010 0.0 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
2 Hb_008253_010 0.0716643103 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
3 Hb_001863_260 0.0746338459 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000364_080 0.0790522302 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
5 Hb_009265_080 0.0829647136 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
6 Hb_010423_020 0.0850070736 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
7 Hb_002942_160 0.0862523634 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
8 Hb_007336_020 0.0870745967 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
9 Hb_004678_060 0.0895974477 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
10 Hb_007643_050 0.096153009 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000640_320 0.096343572 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
12 Hb_007590_080 0.0970553502 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
13 Hb_003641_050 0.0975766859 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
14 Hb_003006_060 0.0976481489 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
15 Hb_000789_080 0.0987655035 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
16 Hb_002475_160 0.0988279571 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
17 Hb_002044_060 0.1012037437 - - elongation factor ts, putative [Ricinus communis]
18 Hb_005829_010 0.1013743325 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
19 Hb_001369_180 0.1016570192 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
20 Hb_007026_030 0.1032537822 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]

Gene co-expression network

sample Hb_134364_010 Hb_134364_010 Hb_008253_010 Hb_008253_010 Hb_134364_010--Hb_008253_010 Hb_001863_260 Hb_001863_260 Hb_134364_010--Hb_001863_260 Hb_000364_080 Hb_000364_080 Hb_134364_010--Hb_000364_080 Hb_009265_080 Hb_009265_080 Hb_134364_010--Hb_009265_080 Hb_010423_020 Hb_010423_020 Hb_134364_010--Hb_010423_020 Hb_002942_160 Hb_002942_160 Hb_134364_010--Hb_002942_160 Hb_008253_010--Hb_009265_080 Hb_002007_350 Hb_002007_350 Hb_008253_010--Hb_002007_350 Hb_004678_060 Hb_004678_060 Hb_008253_010--Hb_004678_060 Hb_007336_020 Hb_007336_020 Hb_008253_010--Hb_007336_020 Hb_007590_080 Hb_007590_080 Hb_008253_010--Hb_007590_080 Hb_006824_060 Hb_006824_060 Hb_001863_260--Hb_006824_060 Hb_030827_030 Hb_030827_030 Hb_001863_260--Hb_030827_030 Hb_007262_020 Hb_007262_020 Hb_001863_260--Hb_007262_020 Hb_001085_250 Hb_001085_250 Hb_001863_260--Hb_001085_250 Hb_001863_260--Hb_008253_010 Hb_000364_080--Hb_002942_160 Hb_000523_090 Hb_000523_090 Hb_000364_080--Hb_000523_090 Hb_002044_060 Hb_002044_060 Hb_000364_080--Hb_002044_060 Hb_002067_020 Hb_002067_020 Hb_000364_080--Hb_002067_020 Hb_010642_030 Hb_010642_030 Hb_000364_080--Hb_010642_030 Hb_009265_080--Hb_002007_350 Hb_009265_080--Hb_004678_060 Hb_002400_180 Hb_002400_180 Hb_009265_080--Hb_002400_180 Hb_000803_300 Hb_000803_300 Hb_009265_080--Hb_000803_300 Hb_004195_280 Hb_004195_280 Hb_009265_080--Hb_004195_280 Hb_010423_020--Hb_004195_280 Hb_002174_060 Hb_002174_060 Hb_010423_020--Hb_002174_060 Hb_003006_060 Hb_003006_060 Hb_010423_020--Hb_003006_060 Hb_010423_020--Hb_009265_080 Hb_000364_060 Hb_000364_060 Hb_010423_020--Hb_000364_060 Hb_010931_080 Hb_010931_080 Hb_002942_160--Hb_010931_080 Hb_002942_160--Hb_002044_060 Hb_004370_030 Hb_004370_030 Hb_002942_160--Hb_004370_030 Hb_000789_080 Hb_000789_080 Hb_002942_160--Hb_000789_080 Hb_008695_120 Hb_008695_120 Hb_002942_160--Hb_008695_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.3377 7.79344 9.62713 7.54244 18.0278 27.4299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.604 8.85457 6.89887 6.10697 8.86902

CAGE analysis