Hb_134488_010

Information

Type -
Description -
Location Contig134488: 288-701
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134488_010 0.0 - - -
2 Hb_025905_020 0.157652047 - - major allergen Pru ar 1-like [Jatropha curcas]
3 Hb_068804_080 0.1779364679 - - PREDICTED: protein BRICK 1 [Jatropha curcas]
4 Hb_177152_010 0.2092245428 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
5 Hb_169329_010 0.2138122898 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
6 Hb_041025_010 0.2161114549 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
7 Hb_178620_010 0.2176662152 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
8 Hb_000082_020 0.2230024998 - - -
9 Hb_060054_010 0.2261037551 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
10 Hb_010964_020 0.2295293687 - - RNA helicase [Arabidopsis thaliana]
11 Hb_169505_010 0.2310934616 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
12 Hb_000258_360 0.2407080249 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
13 Hb_001005_150 0.242791682 - - -
14 Hb_114079_010 0.2437028638 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
15 Hb_035436_010 0.245959638 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
16 Hb_000589_230 0.2504959726 - - unknown [Picea sitchensis]
17 Hb_013358_100 0.2542117841 - - unknown [Medicago truncatula]
18 Hb_186304_010 0.255238111 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
19 Hb_106873_020 0.2558399125 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
20 Hb_011139_060 0.2588393685 - - -

Gene co-expression network

sample Hb_134488_010 Hb_134488_010 Hb_025905_020 Hb_025905_020 Hb_134488_010--Hb_025905_020 Hb_068804_080 Hb_068804_080 Hb_134488_010--Hb_068804_080 Hb_177152_010 Hb_177152_010 Hb_134488_010--Hb_177152_010 Hb_169329_010 Hb_169329_010 Hb_134488_010--Hb_169329_010 Hb_041025_010 Hb_041025_010 Hb_134488_010--Hb_041025_010 Hb_178620_010 Hb_178620_010 Hb_134488_010--Hb_178620_010 Hb_010964_020 Hb_010964_020 Hb_025905_020--Hb_010964_020 Hb_025905_020--Hb_178620_010 Hb_114079_010 Hb_114079_010 Hb_025905_020--Hb_114079_010 Hb_035436_010 Hb_035436_010 Hb_025905_020--Hb_035436_010 Hb_025905_020--Hb_041025_010 Hb_160203_010 Hb_160203_010 Hb_068804_080--Hb_160203_010 Hb_103790_010 Hb_103790_010 Hb_068804_080--Hb_103790_010 Hb_007136_020 Hb_007136_020 Hb_068804_080--Hb_007136_020 Hb_004570_050 Hb_004570_050 Hb_068804_080--Hb_004570_050 Hb_182249_010 Hb_182249_010 Hb_068804_080--Hb_182249_010 Hb_013358_100 Hb_013358_100 Hb_177152_010--Hb_013358_100 Hb_145317_010 Hb_145317_010 Hb_177152_010--Hb_145317_010 Hb_177152_010--Hb_169329_010 Hb_177152_010--Hb_035436_010 Hb_065841_010 Hb_065841_010 Hb_177152_010--Hb_065841_010 Hb_177152_010--Hb_178620_010 Hb_000258_360 Hb_000258_360 Hb_169329_010--Hb_000258_360 Hb_059641_010 Hb_059641_010 Hb_169329_010--Hb_059641_010 Hb_004935_080 Hb_004935_080 Hb_169329_010--Hb_004935_080 Hb_169329_010--Hb_013358_100 Hb_000136_190 Hb_000136_190 Hb_169329_010--Hb_000136_190 Hb_000082_020 Hb_000082_020 Hb_041025_010--Hb_000082_020 Hb_046120_010 Hb_046120_010 Hb_041025_010--Hb_046120_010 Hb_041025_010--Hb_114079_010 Hb_183522_010 Hb_183522_010 Hb_041025_010--Hb_183522_010 Hb_041025_010--Hb_010964_020 Hb_169505_010 Hb_169505_010 Hb_041025_010--Hb_169505_010 Hb_178620_010--Hb_010964_020 Hb_068569_010 Hb_068569_010 Hb_178620_010--Hb_068569_010 Hb_002388_010 Hb_002388_010 Hb_178620_010--Hb_002388_010 Hb_178620_010--Hb_013358_100 Hb_002192_090 Hb_002192_090 Hb_178620_010--Hb_002192_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.1218 50.7304 66.5648 149.786 34.6574 204.011
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.871 4.97601 1.33864 0.573251 0

CAGE analysis