Hb_134732_010

Information

Type -
Description -
Location Contig134732: 210-1060
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134732_010 0.0 - - -
2 Hb_000038_150 0.1464664317 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
3 Hb_005116_020 0.1532462387 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
4 Hb_001159_210 0.1587498471 - - PREDICTED: MATE efflux family protein DTX1 [Jatropha curcas]
5 Hb_003320_030 0.1725771041 - - conserved hypothetical protein [Ricinus communis]
6 Hb_156144_020 0.1770739251 - - PREDICTED: uncharacterized protein At5g65660 [Vitis vinifera]
7 Hb_000200_060 0.1842176026 - - palmitoyl-acyl carrier thioesterase [Medicago truncatula]
8 Hb_002983_100 0.1845453488 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
9 Hb_002326_060 0.1854204953 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
10 Hb_114868_010 0.1889210353 - - -
11 Hb_000176_060 0.194622526 - - unnamed protein product [Vitis vinifera]
12 Hb_031073_010 0.1974477319 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
13 Hb_001741_100 0.1978206692 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]
14 Hb_005568_070 0.2038046038 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
15 Hb_000161_100 0.2056681342 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
16 Hb_010603_030 0.2060622842 - - -
17 Hb_000544_120 0.2069288076 - - PREDICTED: thymidylate kinase [Jatropha curcas]
18 Hb_000018_160 0.2069798607 - - nitrate transporter, putative [Ricinus communis]
19 Hb_013983_010 0.2084620243 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
20 Hb_004460_020 0.2109747347 - - chaperone protein DNAj, putative [Ricinus communis]

Gene co-expression network

sample Hb_134732_010 Hb_134732_010 Hb_000038_150 Hb_000038_150 Hb_134732_010--Hb_000038_150 Hb_005116_020 Hb_005116_020 Hb_134732_010--Hb_005116_020 Hb_001159_210 Hb_001159_210 Hb_134732_010--Hb_001159_210 Hb_003320_030 Hb_003320_030 Hb_134732_010--Hb_003320_030 Hb_156144_020 Hb_156144_020 Hb_134732_010--Hb_156144_020 Hb_000200_060 Hb_000200_060 Hb_134732_010--Hb_000200_060 Hb_045502_010 Hb_045502_010 Hb_000038_150--Hb_045502_010 Hb_000038_150--Hb_001159_210 Hb_035360_010 Hb_035360_010 Hb_000038_150--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000038_150--Hb_000619_070 Hb_004460_020 Hb_004460_020 Hb_000038_150--Hb_004460_020 Hb_002983_100 Hb_002983_100 Hb_005116_020--Hb_002983_100 Hb_005116_020--Hb_003320_030 Hb_005116_020--Hb_001159_210 Hb_005116_020--Hb_000038_150 Hb_029866_010 Hb_029866_010 Hb_005116_020--Hb_029866_010 Hb_002326_060 Hb_002326_060 Hb_001159_210--Hb_002326_060 Hb_047661_010 Hb_047661_010 Hb_001159_210--Hb_047661_010 Hb_001159_210--Hb_004460_020 Hb_001159_210--Hb_003320_030 Hb_003320_030--Hb_002983_100 Hb_001329_260 Hb_001329_260 Hb_003320_030--Hb_001329_260 Hb_003320_030--Hb_000038_150 Hb_001892_160 Hb_001892_160 Hb_156144_020--Hb_001892_160 Hb_000175_530 Hb_000175_530 Hb_156144_020--Hb_000175_530 Hb_000580_060 Hb_000580_060 Hb_156144_020--Hb_000580_060 Hb_003494_260 Hb_003494_260 Hb_156144_020--Hb_003494_260 Hb_001017_100 Hb_001017_100 Hb_156144_020--Hb_001017_100 Hb_007634_020 Hb_007634_020 Hb_156144_020--Hb_007634_020 Hb_001741_100 Hb_001741_100 Hb_000200_060--Hb_001741_100 Hb_002234_220 Hb_002234_220 Hb_000200_060--Hb_002234_220 Hb_002124_020 Hb_002124_020 Hb_000200_060--Hb_002124_020 Hb_002217_130 Hb_002217_130 Hb_000200_060--Hb_002217_130 Hb_000007_310 Hb_000007_310 Hb_000200_060--Hb_000007_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.8273 2.05985 1.07442 1.10662 37.5411 18.37
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.222712 0.524873 0.549709 0.683047 0

CAGE analysis