Hb_134949_010

Information

Type -
Description -
Location Contig134949: 4805-7636
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07670g
description POPTRDRAFT_1082860; hypothetical protein
nr
ID XP_012066575.1
description PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
swissprot
ID Q5HNW7
description Chaperone protein DnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1
trembl
ID A0A067LDM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24369 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09846: 4875-5079 , PASA_asmbl_09847: 6358-7156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134949_010 0.0 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
2 Hb_002071_030 0.0905107883 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
3 Hb_001517_010 0.0928292473 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001195_290 0.0930669838 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
5 Hb_000029_330 0.0980640548 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
6 Hb_000317_180 0.0995905769 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
7 Hb_009296_030 0.1009664729 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
8 Hb_000803_170 0.1033530616 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
9 Hb_002477_020 0.1037875047 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
10 Hb_000898_090 0.1084068664 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
11 Hb_000035_340 0.1094696371 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001266_160 0.1097023169 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
13 Hb_007803_040 0.1118146939 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
14 Hb_006472_040 0.1131161711 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
15 Hb_000856_280 0.114080624 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
16 Hb_000089_140 0.1206344024 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
17 Hb_001268_170 0.1215554172 - - glycerophosphodiester phosphodiesterase, putative [Ricinus communis]
18 Hb_000193_220 0.1222166792 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
19 Hb_022137_050 0.1271961651 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
20 Hb_058620_080 0.1272210632 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_134949_010 Hb_134949_010 Hb_002071_030 Hb_002071_030 Hb_134949_010--Hb_002071_030 Hb_001517_010 Hb_001517_010 Hb_134949_010--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_134949_010--Hb_001195_290 Hb_000029_330 Hb_000029_330 Hb_134949_010--Hb_000029_330 Hb_000317_180 Hb_000317_180 Hb_134949_010--Hb_000317_180 Hb_009296_030 Hb_009296_030 Hb_134949_010--Hb_009296_030 Hb_000174_080 Hb_000174_080 Hb_002071_030--Hb_000174_080 Hb_001268_170 Hb_001268_170 Hb_002071_030--Hb_001268_170 Hb_003602_100 Hb_003602_100 Hb_002071_030--Hb_003602_100 Hb_002071_030--Hb_001195_290 Hb_002249_090 Hb_002249_090 Hb_002071_030--Hb_002249_090 Hb_001517_010--Hb_001195_290 Hb_000107_540 Hb_000107_540 Hb_001517_010--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_001517_010--Hb_005523_040 Hb_001584_210 Hb_001584_210 Hb_001517_010--Hb_001584_210 Hb_001691_180 Hb_001691_180 Hb_001517_010--Hb_001691_180 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001195_290--Hb_001268_170 Hb_001266_160 Hb_001266_160 Hb_000029_330--Hb_001266_160 Hb_000029_330--Hb_000317_180 Hb_002835_090 Hb_002835_090 Hb_000029_330--Hb_002835_090 Hb_000898_090 Hb_000898_090 Hb_000029_330--Hb_000898_090 Hb_004979_050 Hb_004979_050 Hb_000029_330--Hb_004979_050 Hb_002477_020 Hb_002477_020 Hb_000317_180--Hb_002477_020 Hb_000089_140 Hb_000089_140 Hb_000317_180--Hb_000089_140 Hb_000803_170 Hb_000803_170 Hb_000317_180--Hb_000803_170 Hb_000317_180--Hb_009296_030 Hb_000317_180--Hb_001266_160 Hb_009296_030--Hb_002477_020 Hb_022137_050 Hb_022137_050 Hb_009296_030--Hb_022137_050 Hb_000856_280 Hb_000856_280 Hb_009296_030--Hb_000856_280 Hb_009296_030--Hb_006472_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0736735 0.0899367 1.40212 0.589045 0.0493291 0.0508253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.14974 0.0883452 0.109928 0.141391 3.24179

CAGE analysis