Hb_134949_020

Information

Type -
Description -
Location Contig134949: 8580-9850
Sequence    

Annotation

kegg
ID cmo:103497403
description thioredoxin-like protein YLS8
nr
ID XP_004148041.1
description PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
swissprot
ID Q9FE62
description Thioredoxin-like protein YLS8 OS=Arabidopsis thaliana GN=YLS8 PE=2 SV=1
trembl
ID F8RWT4
description Mitosis protein YLS8 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005681
description thioredoxin-like protein yls8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09848: 8360-10021
cDNA
(Sanger)
(ID:Location)		 005_A12.ab1: 8442-9966 , 009_M02.ab1: 8464-10021 , 021_G14.ab1: 8395-10002 , 025_O03.ab1: 8385-10002 , 046_A08.ab1: 8398-10002

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134949_020 0.0 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
2 Hb_165132_010 0.0593258869 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
3 Hb_001341_090 0.0670016414 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
4 Hb_033594_110 0.0689366151 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
5 Hb_000996_140 0.0744603561 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
6 Hb_002864_050 0.0771367382 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
7 Hb_001314_100 0.0773219923 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
8 Hb_000699_160 0.0776946717 - - PREDICTED: C-Myc-binding protein homolog [Jatropha curcas]
9 Hb_001369_640 0.0777444209 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
10 Hb_002518_050 0.079723896 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
11 Hb_004453_170 0.0802668208 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
12 Hb_001279_310 0.0803983799 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
13 Hb_012368_020 0.0844468368 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
14 Hb_005045_060 0.0848981845 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
15 Hb_002289_120 0.0849381598 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
16 Hb_002783_270 0.085317543 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
17 Hb_002234_070 0.0853556045 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
18 Hb_002830_020 0.086089308 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_030736_080 0.0863925807 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012573_070 0.0870222558 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_134949_020 Hb_134949_020 Hb_165132_010 Hb_165132_010 Hb_134949_020--Hb_165132_010 Hb_001341_090 Hb_001341_090 Hb_134949_020--Hb_001341_090 Hb_033594_110 Hb_033594_110 Hb_134949_020--Hb_033594_110 Hb_000996_140 Hb_000996_140 Hb_134949_020--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_134949_020--Hb_002864_050 Hb_001314_100 Hb_001314_100 Hb_134949_020--Hb_001314_100 Hb_001662_070 Hb_001662_070 Hb_165132_010--Hb_001662_070 Hb_002874_190 Hb_002874_190 Hb_165132_010--Hb_002874_190 Hb_165132_010--Hb_033594_110 Hb_002518_050 Hb_002518_050 Hb_165132_010--Hb_002518_050 Hb_165132_010--Hb_002864_050 Hb_005045_060 Hb_005045_060 Hb_001341_090--Hb_005045_060 Hb_001341_090--Hb_000996_140 Hb_001341_090--Hb_002864_050 Hb_000527_060 Hb_000527_060 Hb_001341_090--Hb_000527_060 Hb_002343_060 Hb_002343_060 Hb_001341_090--Hb_002343_060 Hb_000630_060 Hb_000630_060 Hb_033594_110--Hb_000630_060 Hb_003126_090 Hb_003126_090 Hb_033594_110--Hb_003126_090 Hb_145880_030 Hb_145880_030 Hb_033594_110--Hb_145880_030 Hb_001016_030 Hb_001016_030 Hb_033594_110--Hb_001016_030 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_026053_020 Hb_026053_020 Hb_000996_140--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_000996_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_000996_140--Hb_003226_100 Hb_002768_030 Hb_002768_030 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010 Hb_000029_200 Hb_000029_200 Hb_002864_050--Hb_000029_200 Hb_002830_020 Hb_002830_020 Hb_002864_050--Hb_002830_020 Hb_007416_030 Hb_007416_030 Hb_002864_050--Hb_007416_030 Hb_101705_030 Hb_101705_030 Hb_002864_050--Hb_101705_030 Hb_002864_050--Hb_002874_190 Hb_012573_070 Hb_012573_070 Hb_001314_100--Hb_012573_070 Hb_001369_640 Hb_001369_640 Hb_001314_100--Hb_001369_640 Hb_168054_010 Hb_168054_010 Hb_001314_100--Hb_168054_010 Hb_001314_100--Hb_165132_010 Hb_001314_100--Hb_000029_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
625.265 246.724 504.771 563.351 416.338 560.981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
923.692 1455.84 598.748 229.772 175.468

CAGE analysis