Hb_134951_010

Information

Type -
Description -
Location Contig134951: 1025-1462
Sequence    

Annotation

kegg
ID rcu:RCOM_1512870
description DNA binding protein, putative
nr
ID XP_012080161.1
description PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
swissprot
ID Q2V9B0
description Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KH70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11545 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb1r1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09849: 782-1454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134951_010 0.0 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
2 Hb_001486_080 0.0896745793 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
3 Hb_001828_200 0.0920632582 - - ribosomal protein L13 [Populus trichocarpa]
4 Hb_001898_230 0.0977207658 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
5 Hb_002024_040 0.0987113502 - - PREDICTED: adenosine kinase [Jatropha curcas]
6 Hb_002284_280 0.0997233062 transcription factor TF Family: HMG high mobility group protein [Hevea brasiliensis]
7 Hb_001623_140 0.1018968371 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
8 Hb_000890_040 0.1035072764 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
9 Hb_007164_020 0.1036160956 - - hypothetical protein glysoja_025872 [Glycine soja]
10 Hb_008803_090 0.1046659901 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
11 Hb_000926_310 0.1053523117 - - uncharacterized protein LOC100500241 [Glycine max]
12 Hb_000046_300 0.1112088383 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
13 Hb_000707_060 0.1118157303 - - -
14 Hb_000721_010 0.1175272296 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001511_020 0.121035426 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
16 Hb_106552_050 0.1211582215 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
17 Hb_189147_010 0.1227791424 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
18 Hb_029920_050 0.1230165348 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
19 Hb_052764_050 0.123284053 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
20 Hb_000926_020 0.1241908173 - - -

Gene co-expression network

sample Hb_134951_010 Hb_134951_010 Hb_001486_080 Hb_001486_080 Hb_134951_010--Hb_001486_080 Hb_001828_200 Hb_001828_200 Hb_134951_010--Hb_001828_200 Hb_001898_230 Hb_001898_230 Hb_134951_010--Hb_001898_230 Hb_002024_040 Hb_002024_040 Hb_134951_010--Hb_002024_040 Hb_002284_280 Hb_002284_280 Hb_134951_010--Hb_002284_280 Hb_001623_140 Hb_001623_140 Hb_134951_010--Hb_001623_140 Hb_000406_240 Hb_000406_240 Hb_001486_080--Hb_000406_240 Hb_002301_220 Hb_002301_220 Hb_001486_080--Hb_002301_220 Hb_007982_070 Hb_007982_070 Hb_001486_080--Hb_007982_070 Hb_008554_120 Hb_008554_120 Hb_001486_080--Hb_008554_120 Hb_005883_010 Hb_005883_010 Hb_001486_080--Hb_005883_010 Hb_007164_020 Hb_007164_020 Hb_001828_200--Hb_007164_020 Hb_052764_050 Hb_052764_050 Hb_001828_200--Hb_052764_050 Hb_001288_080 Hb_001288_080 Hb_001828_200--Hb_001288_080 Hb_001135_020 Hb_001135_020 Hb_001828_200--Hb_001135_020 Hb_002292_010 Hb_002292_010 Hb_001828_200--Hb_002292_010 Hb_019962_030 Hb_019962_030 Hb_001898_230--Hb_019962_030 Hb_001898_230--Hb_007164_020 Hb_001511_020 Hb_001511_020 Hb_001898_230--Hb_001511_020 Hb_000089_220 Hb_000089_220 Hb_001898_230--Hb_000089_220 Hb_000473_040 Hb_000473_040 Hb_001898_230--Hb_000473_040 Hb_007007_050 Hb_007007_050 Hb_001898_230--Hb_007007_050 Hb_000046_300 Hb_000046_300 Hb_002024_040--Hb_000046_300 Hb_008253_010 Hb_008253_010 Hb_002024_040--Hb_008253_010 Hb_007026_030 Hb_007026_030 Hb_002024_040--Hb_007026_030 Hb_000368_020 Hb_000368_020 Hb_002024_040--Hb_000368_020 Hb_007904_120 Hb_007904_120 Hb_002024_040--Hb_007904_120 Hb_001357_090 Hb_001357_090 Hb_002024_040--Hb_001357_090 Hb_005675_040 Hb_005675_040 Hb_002284_280--Hb_005675_040 Hb_003052_140 Hb_003052_140 Hb_002284_280--Hb_003052_140 Hb_010738_010 Hb_010738_010 Hb_002284_280--Hb_010738_010 Hb_000796_180 Hb_000796_180 Hb_002284_280--Hb_000796_180 Hb_003609_030 Hb_003609_030 Hb_002284_280--Hb_003609_030 Hb_001168_040 Hb_001168_040 Hb_001623_140--Hb_001168_040 Hb_001610_110 Hb_001610_110 Hb_001623_140--Hb_001610_110 Hb_001623_140--Hb_001288_080 Hb_001720_010 Hb_001720_010 Hb_001623_140--Hb_001720_010 Hb_023827_040 Hb_023827_040 Hb_001623_140--Hb_023827_040 Hb_004324_340 Hb_004324_340 Hb_001623_140--Hb_004324_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
913.507 418.357 379.026 124.958 343.533 501.525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
370.496 416.673 395.678 161.075 147.317

CAGE analysis