Hb_135052_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig135052: 11-682
Sequence    

Annotation

kegg
ID rcu:RCOM_0751360
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012065986.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067JQ82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21080 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135052_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_011224_070 0.0677833889 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
3 Hb_001511_220 0.0753852635 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
4 Hb_003747_160 0.0780705049 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001096_010 0.0793228758 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
6 Hb_005614_020 0.0839650845 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
7 Hb_001104_060 0.0895140208 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9 [Jatropha curcas]
8 Hb_004225_120 0.0897391586 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
9 Hb_004650_120 0.0902522035 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
10 Hb_001225_050 0.0922408437 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
11 Hb_002835_360 0.0946796218 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
12 Hb_148262_010 0.0986357229 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003376_060 0.099122167 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
14 Hb_002499_030 0.0994564661 - - receptor-kinase, putative [Ricinus communis]
15 Hb_015807_090 0.1015653351 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
16 Hb_009117_020 0.1027904258 - - RALF-LIKE 32 family protein [Populus trichocarpa]
17 Hb_002662_070 0.105916358 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
18 Hb_001051_060 0.1066328359 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
19 Hb_009476_080 0.1095981387 - - BnaA03g18920D [Brassica napus]
20 Hb_005686_040 0.1096206792 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_135052_010 Hb_135052_010 Hb_011224_070 Hb_011224_070 Hb_135052_010--Hb_011224_070 Hb_001511_220 Hb_001511_220 Hb_135052_010--Hb_001511_220 Hb_003747_160 Hb_003747_160 Hb_135052_010--Hb_003747_160 Hb_001096_010 Hb_001096_010 Hb_135052_010--Hb_001096_010 Hb_005614_020 Hb_005614_020 Hb_135052_010--Hb_005614_020 Hb_001104_060 Hb_001104_060 Hb_135052_010--Hb_001104_060 Hb_011224_070--Hb_003747_160 Hb_003376_060 Hb_003376_060 Hb_011224_070--Hb_003376_060 Hb_004225_120 Hb_004225_120 Hb_011224_070--Hb_004225_120 Hb_011224_070--Hb_001511_220 Hb_011224_070--Hb_001096_010 Hb_011224_070--Hb_005614_020 Hb_001511_220--Hb_003747_160 Hb_009476_080 Hb_009476_080 Hb_001511_220--Hb_009476_080 Hb_004650_120 Hb_004650_120 Hb_001511_220--Hb_004650_120 Hb_002835_360 Hb_002835_360 Hb_001511_220--Hb_002835_360 Hb_002499_030 Hb_002499_030 Hb_001511_220--Hb_002499_030 Hb_001051_060 Hb_001051_060 Hb_003747_160--Hb_001051_060 Hb_015807_090 Hb_015807_090 Hb_003747_160--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_003747_160--Hb_005686_040 Hb_003747_160--Hb_009476_080 Hb_003747_160--Hb_004225_120 Hb_001096_010--Hb_002499_030 Hb_001096_010--Hb_005614_020 Hb_001096_010--Hb_003747_160 Hb_001096_010--Hb_001511_220 Hb_001195_710 Hb_001195_710 Hb_001096_010--Hb_001195_710 Hb_005614_020--Hb_003747_160 Hb_005614_020--Hb_002499_030 Hb_005614_020--Hb_015807_090 Hb_005614_020--Hb_004225_120 Hb_042083_010 Hb_042083_010 Hb_005614_020--Hb_042083_010 Hb_000531_030 Hb_000531_030 Hb_001104_060--Hb_000531_030 Hb_001104_060--Hb_011224_070 Hb_001104_060--Hb_003376_060 Hb_001456_030 Hb_001456_030 Hb_001104_060--Hb_001456_030 Hb_000699_220 Hb_000699_220 Hb_001104_060--Hb_000699_220 Hb_000227_360 Hb_000227_360 Hb_001104_060--Hb_000227_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0838534 0.75107 1.21871 8.82773 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0274528 4.50513

CAGE analysis