Hb_135442_010

Information

Type -
Description -
Location Contig135442: 64-513
Sequence    

Annotation

kegg
ID tcc:TCM_046052
description Phosphoprotein phosphatase
nr
ID KDO64062.1
description hypothetical protein CISIN_1g022501mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FKT2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022501mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135442_010 0.0 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
2 Hb_002035_080 0.1799948465 - - unnamed protein product [Vitis vinifera]
3 Hb_000206_190 0.1883766571 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
4 Hb_003157_030 0.1940116974 - - PREDICTED: exocyst complex component EXO70A1-like [Nicotiana sylvestris]
5 Hb_000193_140 0.2011736465 - - conserved hypothetical protein [Ricinus communis]
6 Hb_141547_010 0.2015111941 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
7 Hb_007603_010 0.2105360904 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007904_080 0.2170759084 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
9 Hb_040255_010 0.219390785 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
10 Hb_000158_100 0.2233944513 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006816_410 0.2264151658 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
12 Hb_002742_070 0.2273991124 - - PREDICTED: villin-4-like [Jatropha curcas]
13 Hb_001900_110 0.2293786844 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
14 Hb_003157_010 0.2312915113 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
15 Hb_006501_020 0.2314024125 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
16 Hb_007348_040 0.2317025608 transcription factor TF Family: PHD hypothetical protein RCOM_1314010 [Ricinus communis]
17 Hb_002762_130 0.2322515608 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
18 Hb_084470_010 0.2340483094 - - Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_001050_030 0.2347060162 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
20 Hb_011798_040 0.2349974921 - - hypothetical protein ZEAMMB73_778895 [Zea mays]

Gene co-expression network

sample Hb_135442_010 Hb_135442_010 Hb_002035_080 Hb_002035_080 Hb_135442_010--Hb_002035_080 Hb_000206_190 Hb_000206_190 Hb_135442_010--Hb_000206_190 Hb_003157_030 Hb_003157_030 Hb_135442_010--Hb_003157_030 Hb_000193_140 Hb_000193_140 Hb_135442_010--Hb_000193_140 Hb_141547_010 Hb_141547_010 Hb_135442_010--Hb_141547_010 Hb_007603_010 Hb_007603_010 Hb_135442_010--Hb_007603_010 Hb_002035_080--Hb_000193_140 Hb_002035_090 Hb_002035_090 Hb_002035_080--Hb_002035_090 Hb_000334_180 Hb_000334_180 Hb_002035_080--Hb_000334_180 Hb_133748_010 Hb_133748_010 Hb_002035_080--Hb_133748_010 Hb_008778_010 Hb_008778_010 Hb_002035_080--Hb_008778_010 Hb_071869_010 Hb_071869_010 Hb_000206_190--Hb_071869_010 Hb_001050_030 Hb_001050_030 Hb_000206_190--Hb_001050_030 Hb_102632_010 Hb_102632_010 Hb_000206_190--Hb_102632_010 Hb_002154_070 Hb_002154_070 Hb_000206_190--Hb_002154_070 Hb_002863_120 Hb_002863_120 Hb_000206_190--Hb_002863_120 Hb_006501_020 Hb_006501_020 Hb_003157_030--Hb_006501_020 Hb_002815_060 Hb_002815_060 Hb_003157_030--Hb_002815_060 Hb_002742_070 Hb_002742_070 Hb_003157_030--Hb_002742_070 Hb_031069_020 Hb_031069_020 Hb_003157_030--Hb_031069_020 Hb_003376_070 Hb_003376_070 Hb_003157_030--Hb_003376_070 Hb_003157_030--Hb_141547_010 Hb_010427_010 Hb_010427_010 Hb_000193_140--Hb_010427_010 Hb_007064_010 Hb_007064_010 Hb_000193_140--Hb_007064_010 Hb_000189_110 Hb_000189_110 Hb_000193_140--Hb_000189_110 Hb_090855_010 Hb_090855_010 Hb_000193_140--Hb_090855_010 Hb_004137_060 Hb_004137_060 Hb_000193_140--Hb_004137_060 Hb_000574_070 Hb_000574_070 Hb_000193_140--Hb_000574_070 Hb_000997_030 Hb_000997_030 Hb_141547_010--Hb_000997_030 Hb_000023_060 Hb_000023_060 Hb_141547_010--Hb_000023_060 Hb_001900_110 Hb_001900_110 Hb_141547_010--Hb_001900_110 Hb_002400_240 Hb_002400_240 Hb_141547_010--Hb_002400_240 Hb_006816_300 Hb_006816_300 Hb_141547_010--Hb_006816_300 Hb_002762_130 Hb_002762_130 Hb_141547_010--Hb_002762_130 Hb_007904_080 Hb_007904_080 Hb_007603_010--Hb_007904_080 Hb_000041_020 Hb_000041_020 Hb_007603_010--Hb_000041_020 Hb_109168_010 Hb_109168_010 Hb_007603_010--Hb_109168_010 Hb_000850_050 Hb_000850_050 Hb_007603_010--Hb_000850_050 Hb_001484_120 Hb_001484_120 Hb_007603_010--Hb_001484_120 Hb_000099_210 Hb_000099_210 Hb_007603_010--Hb_000099_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.95777 3.28582 0.661362 0.938096 2.34477 7.58207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.0855 2.91631 1.6077

CAGE analysis