Hb_135545_010

Information

Type -
Description -
Location Contig135545: 4104-4655
Sequence    

Annotation

kegg
ID rcu:RCOM_0851860
description calmodulin binding protein, putative
nr
ID XP_002517378.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RUD3
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0851860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09887: 3711-4859 , PASA_asmbl_09888: 3796-8612
cDNA
(Sanger)
(ID:Location)		 001_L08.ab1: 3713-4515

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135545_010 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_012762_050 0.0538269266 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
3 Hb_000473_040 0.0655443027 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
4 Hb_001301_160 0.0706371212 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
5 Hb_000139_350 0.0710787016 - - AtGCP3 interacting protein 1 [Theobroma cacao]
6 Hb_002007_060 0.0714088967 - - hypothetical protein JCGZ_23323 [Jatropha curcas]
7 Hb_011571_020 0.0805968594 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
8 Hb_002868_010 0.0815628426 - - 60S ribosomal protein L30, putative [Ricinus communis]
9 Hb_005332_070 0.0825439936 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
10 Hb_001511_020 0.0851155305 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
11 Hb_001512_070 0.0862381508 - - PREDICTED: ras-related protein RABB1b [Malus domestica]
12 Hb_001305_010 0.0868101922 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
13 Hb_000141_040 0.0871752801 - - hypothetical protein CICLE_v10022858mg [Citrus clementina]
14 Hb_000661_250 0.0883335101 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
15 Hb_001195_760 0.0915571832 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
16 Hb_005539_350 0.0923991227 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000788_100 0.0926992936 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
18 Hb_003078_040 0.0932178784 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
19 Hb_003939_080 0.0935217637 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011360_140 0.0936476732 - - 40S ribosomal protein S19, putative [Ricinus communis]

Gene co-expression network

sample Hb_135545_010 Hb_135545_010 Hb_012762_050 Hb_012762_050 Hb_135545_010--Hb_012762_050 Hb_000473_040 Hb_000473_040 Hb_135545_010--Hb_000473_040 Hb_001301_160 Hb_001301_160 Hb_135545_010--Hb_001301_160 Hb_000139_350 Hb_000139_350 Hb_135545_010--Hb_000139_350 Hb_002007_060 Hb_002007_060 Hb_135545_010--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_135545_010--Hb_011571_020 Hb_012762_050--Hb_000473_040 Hb_000221_220 Hb_000221_220 Hb_012762_050--Hb_000221_220 Hb_001512_070 Hb_001512_070 Hb_012762_050--Hb_001512_070 Hb_012762_050--Hb_002007_060 Hb_012762_050--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_000473_040--Hb_011360_140 Hb_005332_070 Hb_005332_070 Hb_000473_040--Hb_005332_070 Hb_000473_040--Hb_002007_060 Hb_000473_040--Hb_011571_020 Hb_096563_010 Hb_096563_010 Hb_001301_160--Hb_096563_010 Hb_001301_160--Hb_002007_060 Hb_001301_160--Hb_011571_020 Hb_001511_020 Hb_001511_020 Hb_001301_160--Hb_001511_020 Hb_000661_250 Hb_000661_250 Hb_001301_160--Hb_000661_250 Hb_000230_200 Hb_000230_200 Hb_001301_160--Hb_000230_200 Hb_000141_040 Hb_000141_040 Hb_000139_350--Hb_000141_040 Hb_007575_060 Hb_007575_060 Hb_000139_350--Hb_007575_060 Hb_000139_350--Hb_012762_050 Hb_000139_350--Hb_001512_070 Hb_002868_010 Hb_002868_010 Hb_000139_350--Hb_002868_010 Hb_023226_040 Hb_023226_040 Hb_002007_060--Hb_023226_040 Hb_000866_270 Hb_000866_270 Hb_002007_060--Hb_000866_270 Hb_001259_090 Hb_001259_090 Hb_002007_060--Hb_001259_090 Hb_000000_160 Hb_000000_160 Hb_002007_060--Hb_000000_160 Hb_005539_350 Hb_005539_350 Hb_002007_060--Hb_005539_350 Hb_011571_020--Hb_011360_140 Hb_003001_140 Hb_003001_140 Hb_011571_020--Hb_003001_140 Hb_005993_040 Hb_005993_040 Hb_011571_020--Hb_005993_040 Hb_011571_020--Hb_005332_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.5773 43.5819 40.8039 26.3765 63.7481 60.6367
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.8986 96.7227 61.2399 16.3396 14.4304

CAGE analysis