Hb_135569_010

Information

Type -
Description -
Location Contig135569: 1410-2108
Sequence    

Annotation

kegg
ID pop:POPTR_0009s09750g
description POPTRDRAFT_875052; plant basic secretory family protein
nr
ID XP_011001233.1
description PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
swissprot
ID C0HJG8
description Basic secretory protease (Fragments) OS=Boswellia serrata PE=1 SV=1
trembl
ID B9HS70
description Plant basic secretory family protein OS=Populus trichocarpa GN=POPTR_0009s09750g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135569_010 0.0 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
2 Hb_078160_010 0.2005654955 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
3 Hb_170516_010 0.2330199891 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
4 Hb_002217_410 0.2452540504 - - hypothetical protein L484_027883 [Morus notabilis]
5 Hb_005548_030 0.2603602713 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
6 Hb_032990_020 0.2656558968 - - conserved hypothetical protein [Ricinus communis]
7 Hb_115116_010 0.2681290078 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_003939_020 0.2690835182 - - PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
9 Hb_001758_130 0.2773117146 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
10 Hb_000104_070 0.2779921616 - - PREDICTED: citrate-binding protein-like [Jatropha curcas]
11 Hb_000659_020 0.2834352991 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
12 Hb_092062_010 0.2846671019 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
13 Hb_000540_010 0.2850365085 - - PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
14 Hb_131864_030 0.2852920902 transcription factor TF Family: C2H2 transcription factor, putative [Ricinus communis]
15 Hb_133605_010 0.2882471609 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
16 Hb_031403_030 0.2906644311 - - -
17 Hb_008959_040 0.2946380907 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
18 Hb_001079_030 0.2968615986 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
19 Hb_000189_430 0.2998719273 - - unnamed protein product [Vitis vinifera]
20 Hb_025905_010 0.2999618115 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]

Gene co-expression network

sample Hb_135569_010 Hb_135569_010 Hb_078160_010 Hb_078160_010 Hb_135569_010--Hb_078160_010 Hb_170516_010 Hb_170516_010 Hb_135569_010--Hb_170516_010 Hb_002217_410 Hb_002217_410 Hb_135569_010--Hb_002217_410 Hb_005548_030 Hb_005548_030 Hb_135569_010--Hb_005548_030 Hb_032990_020 Hb_032990_020 Hb_135569_010--Hb_032990_020 Hb_115116_010 Hb_115116_010 Hb_135569_010--Hb_115116_010 Hb_000540_010 Hb_000540_010 Hb_078160_010--Hb_000540_010 Hb_001079_030 Hb_001079_030 Hb_078160_010--Hb_001079_030 Hb_007423_030 Hb_007423_030 Hb_078160_010--Hb_007423_030 Hb_078160_010--Hb_005548_030 Hb_006721_070 Hb_006721_070 Hb_078160_010--Hb_006721_070 Hb_170516_010--Hb_115116_010 Hb_011344_100 Hb_011344_100 Hb_170516_010--Hb_011344_100 Hb_001907_130 Hb_001907_130 Hb_170516_010--Hb_001907_130 Hb_001749_030 Hb_001749_030 Hb_170516_010--Hb_001749_030 Hb_115445_010 Hb_115445_010 Hb_170516_010--Hb_115445_010 Hb_000104_070 Hb_000104_070 Hb_002217_410--Hb_000104_070 Hb_005016_180 Hb_005016_180 Hb_002217_410--Hb_005016_180 Hb_001862_080 Hb_001862_080 Hb_002217_410--Hb_001862_080 Hb_045985_010 Hb_045985_010 Hb_002217_410--Hb_045985_010 Hb_000230_310 Hb_000230_310 Hb_002217_410--Hb_000230_310 Hb_000692_120 Hb_000692_120 Hb_005548_030--Hb_000692_120 Hb_003119_050 Hb_003119_050 Hb_005548_030--Hb_003119_050 Hb_001196_080 Hb_001196_080 Hb_005548_030--Hb_001196_080 Hb_005000_140 Hb_005000_140 Hb_005548_030--Hb_005000_140 Hb_074184_010 Hb_074184_010 Hb_005548_030--Hb_074184_010 Hb_055488_020 Hb_055488_020 Hb_005548_030--Hb_055488_020 Hb_032990_020--Hb_005548_030 Hb_000820_160 Hb_000820_160 Hb_032990_020--Hb_000820_160 Hb_032990_020--Hb_078160_010 Hb_001767_040 Hb_001767_040 Hb_032990_020--Hb_001767_040 Hb_000181_410 Hb_000181_410 Hb_032990_020--Hb_000181_410 Hb_115116_010--Hb_001907_130 Hb_115116_010--Hb_011344_100 Hb_000413_150 Hb_000413_150 Hb_115116_010--Hb_000413_150 Hb_005675_060 Hb_005675_060 Hb_115116_010--Hb_005675_060 Hb_014919_020 Hb_014919_020 Hb_115116_010--Hb_014919_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.334281 5.49014 4.32181 4.25715 4.9264 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.227393 0.285245 0.252039

CAGE analysis