Hb_135572_010

Information

Type -
Description -
Location Contig135572: 4689-6533
Sequence    

Annotation

kegg
ID rcu:RCOM_1316790
description GTP-binding protein alpha subunit, gna, putative
nr
ID XP_002518995.1
description GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
swissprot
ID Q9C516
description Extra-large guanine nucleotide-binding protein 3 OS=Arabidopsis thaliana GN=XLG3 PE=1 SV=1
trembl
ID B9RZ26
description GTP-binding protein alpha subunit, gna, putative OS=Ricinus communis GN=RCOM_1316790 PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09891: 4272-4540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135572_010 0.0 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
2 Hb_007994_010 0.0522170325 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
3 Hb_001377_100 0.0574073783 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
4 Hb_004143_160 0.0607850585 - - SAB, putative [Ricinus communis]
5 Hb_000358_050 0.065127562 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
6 Hb_000363_300 0.0680930234 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
7 Hb_000922_030 0.071319839 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
8 Hb_000815_170 0.0756102114 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
9 Hb_000809_230 0.0768088672 - - PREDICTED: uncharacterized protein LOC105639681 isoform X1 [Jatropha curcas]
10 Hb_019337_020 0.0809365605 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
11 Hb_012244_020 0.0810667979 - - calpain, putative [Ricinus communis]
12 Hb_001377_350 0.0820685555 - - PREDICTED: exportin-2 [Jatropha curcas]
13 Hb_004048_120 0.0820812048 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
14 Hb_013459_010 0.0827486801 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
15 Hb_007472_090 0.0829661 - - unnamed protein product [Coffea canephora]
16 Hb_005186_040 0.0831241611 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
17 Hb_006031_010 0.0849457454 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
18 Hb_000925_090 0.0850689227 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
19 Hb_004679_030 0.0857104947 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
20 Hb_000731_010 0.085962145 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_135572_010 Hb_135572_010 Hb_007994_010 Hb_007994_010 Hb_135572_010--Hb_007994_010 Hb_001377_100 Hb_001377_100 Hb_135572_010--Hb_001377_100 Hb_004143_160 Hb_004143_160 Hb_135572_010--Hb_004143_160 Hb_000358_050 Hb_000358_050 Hb_135572_010--Hb_000358_050 Hb_000363_300 Hb_000363_300 Hb_135572_010--Hb_000363_300 Hb_000922_030 Hb_000922_030 Hb_135572_010--Hb_000922_030 Hb_012760_100 Hb_012760_100 Hb_007994_010--Hb_012760_100 Hb_007994_010--Hb_004143_160 Hb_001381_050 Hb_001381_050 Hb_007994_010--Hb_001381_050 Hb_000809_230 Hb_000809_230 Hb_007994_010--Hb_000809_230 Hb_001188_020 Hb_001188_020 Hb_007994_010--Hb_001188_020 Hb_009486_090 Hb_009486_090 Hb_001377_100--Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_001377_100--Hb_006031_010 Hb_005186_040 Hb_005186_040 Hb_001377_100--Hb_005186_040 Hb_012244_020 Hb_012244_020 Hb_001377_100--Hb_012244_020 Hb_000059_230 Hb_000059_230 Hb_001377_100--Hb_000059_230 Hb_004048_120 Hb_004048_120 Hb_004143_160--Hb_004048_120 Hb_004143_160--Hb_000358_050 Hb_002025_330 Hb_002025_330 Hb_004143_160--Hb_002025_330 Hb_002639_080 Hb_002639_080 Hb_004143_160--Hb_002639_080 Hb_000358_050--Hb_004048_120 Hb_004208_050 Hb_004208_050 Hb_000358_050--Hb_004208_050 Hb_000358_050--Hb_000922_030 Hb_011485_060 Hb_011485_060 Hb_000358_050--Hb_011485_060 Hb_000363_300--Hb_012244_020 Hb_011174_020 Hb_011174_020 Hb_000363_300--Hb_011174_020 Hb_000363_300--Hb_001377_100 Hb_000363_300--Hb_006031_010 Hb_012022_060 Hb_012022_060 Hb_000363_300--Hb_012022_060 Hb_000922_030--Hb_002025_330 Hb_000922_030--Hb_004143_160 Hb_000365_240 Hb_000365_240 Hb_000922_030--Hb_000365_240 Hb_007472_090 Hb_007472_090 Hb_000922_030--Hb_007472_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73473 10.3492 6.19185 8.84257 7.11549 11.0491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.72049 4.57254 7.71314 12.4651 19.0708

CAGE analysis