Hb_135611_010

Information

Type -
Description -
Location Contig135611: 776-2425
Sequence    

Annotation

kegg
ID rcu:RCOM_0934860
description hypothetical protein
nr
ID XP_011047845.1
description PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067JAY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21398 PE=4 SV=1
Gene Ontology
ID GO:0005886
description tir class disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09894: 1068-2129
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135611_010 0.0 - - PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
2 Hb_148909_010 0.1026248983 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
3 Hb_004627_060 0.1269522669 - - PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
4 Hb_000516_040 0.1272067267 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]
5 Hb_000088_130 0.1306458942 - - hypothetical protein JCGZ_02447 [Jatropha curcas]
6 Hb_000072_150 0.1327854218 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
7 Hb_001900_120 0.1385768045 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
8 Hb_000983_160 0.1389027093 - - hypothetical protein B456_009G199800 [Gossypium raimondii]
9 Hb_000805_260 0.1404659179 - - PREDICTED: uncharacterized protein LOC105650295 isoform X1 [Jatropha curcas]
10 Hb_004545_170 0.1415170267 - - PREDICTED: autophagy-related protein 18h [Jatropha curcas]
11 Hb_001252_180 0.1441053847 desease resistance Gene Name: DUF3542 conserved hypothetical protein [Ricinus communis]
12 Hb_005321_020 0.1458728512 - - splicing factor-related family protein [Populus trichocarpa]
13 Hb_001050_010 0.1465025617 - - Advillin [Gossypium arboreum]
14 Hb_006449_050 0.1472601539 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX2-like [Jatropha curcas]
15 Hb_000417_160 0.1493224099 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
16 Hb_003531_060 0.1498179525 - - unnamed protein product [Coffea canephora]
17 Hb_138842_010 0.1508800258 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
18 Hb_001599_030 0.1517229866 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
19 Hb_009296_010 0.1530264909 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
20 Hb_002301_080 0.1530300965 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_135611_010 Hb_135611_010 Hb_148909_010 Hb_148909_010 Hb_135611_010--Hb_148909_010 Hb_004627_060 Hb_004627_060 Hb_135611_010--Hb_004627_060 Hb_000516_040 Hb_000516_040 Hb_135611_010--Hb_000516_040 Hb_000088_130 Hb_000088_130 Hb_135611_010--Hb_000088_130 Hb_000072_150 Hb_000072_150 Hb_135611_010--Hb_000072_150 Hb_001900_120 Hb_001900_120 Hb_135611_010--Hb_001900_120 Hb_002255_050 Hb_002255_050 Hb_148909_010--Hb_002255_050 Hb_004306_080 Hb_004306_080 Hb_148909_010--Hb_004306_080 Hb_001930_010 Hb_001930_010 Hb_148909_010--Hb_001930_010 Hb_002255_070 Hb_002255_070 Hb_148909_010--Hb_002255_070 Hb_148909_010--Hb_000088_130 Hb_004627_060--Hb_000088_130 Hb_002107_070 Hb_002107_070 Hb_004627_060--Hb_002107_070 Hb_000856_140 Hb_000856_140 Hb_004627_060--Hb_000856_140 Hb_104061_020 Hb_104061_020 Hb_004627_060--Hb_104061_020 Hb_007635_030 Hb_007635_030 Hb_004627_060--Hb_007635_030 Hb_002329_040 Hb_002329_040 Hb_004627_060--Hb_002329_040 Hb_000983_160 Hb_000983_160 Hb_000516_040--Hb_000983_160 Hb_000563_600 Hb_000563_600 Hb_000516_040--Hb_000563_600 Hb_000172_540 Hb_000172_540 Hb_000516_040--Hb_000172_540 Hb_002478_030 Hb_002478_030 Hb_000516_040--Hb_002478_030 Hb_029866_100 Hb_029866_100 Hb_000516_040--Hb_029866_100 Hb_000375_130 Hb_000375_130 Hb_000088_130--Hb_000375_130 Hb_174821_010 Hb_174821_010 Hb_000088_130--Hb_174821_010 Hb_000088_130--Hb_002107_070 Hb_001454_280 Hb_001454_280 Hb_000088_130--Hb_001454_280 Hb_002301_080 Hb_002301_080 Hb_000088_130--Hb_002301_080 Hb_000510_200 Hb_000510_200 Hb_000072_150--Hb_000510_200 Hb_002893_150 Hb_002893_150 Hb_000072_150--Hb_002893_150 Hb_001235_200 Hb_001235_200 Hb_000072_150--Hb_001235_200 Hb_028487_110 Hb_028487_110 Hb_000072_150--Hb_028487_110 Hb_001599_030 Hb_001599_030 Hb_000072_150--Hb_001599_030 Hb_002131_020 Hb_002131_020 Hb_000072_150--Hb_002131_020 Hb_017895_020 Hb_017895_020 Hb_001900_120--Hb_017895_020 Hb_002675_040 Hb_002675_040 Hb_001900_120--Hb_002675_040 Hb_000329_130 Hb_000329_130 Hb_001900_120--Hb_000329_130 Hb_001050_010 Hb_001050_010 Hb_001900_120--Hb_001050_010 Hb_011609_170 Hb_011609_170 Hb_001900_120--Hb_011609_170 Hb_008725_130 Hb_008725_130 Hb_001900_120--Hb_008725_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3065 4.56114 3.62964 5.2745 10.3911 5.61066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.57871 1.52042 6.10614 6.64935 5.76555

CAGE analysis