Hb_135673_010

Information

Type -
Description -
Location Contig135673: 7481-7973
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04330g
description Germin-like protein subfamily 1 member 6 precursor
nr
ID XP_006371122.1
description Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
swissprot
ID P92997
description Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=2
trembl
ID U5FFG6
description Germin-like protein subfamily 1 member 6 OS=Populus trichocarpa GN=POPTR_0019s04330g PE=4 SV=1
Gene Ontology
ID GO:0030145
description germin-like protein subfamily 1 member 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135673_010 0.0 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
2 Hb_103452_010 0.0145875702 - - hypothetical protein VITISV_027174 [Vitis vinifera]
3 Hb_001006_050 0.0194031408 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
4 Hb_005356_030 0.0253422989 - - protein binding protein, putative [Ricinus communis]
5 Hb_004116_090 0.0693937684 - - -
6 Hb_151094_020 0.0697537454 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
7 Hb_002498_290 0.1101366163 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
8 Hb_000002_150 0.1192324066 - - conserved hypothetical protein [Ricinus communis]
9 Hb_147060_010 0.1199211788 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
10 Hb_000438_030 0.1214765208 - - -
11 Hb_010812_130 0.121672594 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
12 Hb_030736_030 0.1244818099 - - hypothetical protein VITISV_006651 [Vitis vinifera]
13 Hb_000679_280 0.1300829195 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
14 Hb_003020_340 0.1311315287 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
15 Hb_046615_040 0.1413761996 - - unnamed protein product [Vitis vinifera]
16 Hb_003858_050 0.1418110473 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
17 Hb_160814_010 0.1503138662 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
18 Hb_002559_010 0.1522289 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
19 Hb_001862_160 0.1555738296 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
20 Hb_002081_190 0.1560796352 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_135673_010 Hb_135673_010 Hb_103452_010 Hb_103452_010 Hb_135673_010--Hb_103452_010 Hb_001006_050 Hb_001006_050 Hb_135673_010--Hb_001006_050 Hb_005356_030 Hb_005356_030 Hb_135673_010--Hb_005356_030 Hb_004116_090 Hb_004116_090 Hb_135673_010--Hb_004116_090 Hb_151094_020 Hb_151094_020 Hb_135673_010--Hb_151094_020 Hb_002498_290 Hb_002498_290 Hb_135673_010--Hb_002498_290 Hb_103452_010--Hb_005356_030 Hb_103452_010--Hb_001006_050 Hb_103452_010--Hb_004116_090 Hb_103452_010--Hb_151094_020 Hb_000002_150 Hb_000002_150 Hb_103452_010--Hb_000002_150 Hb_001006_050--Hb_005356_030 Hb_001006_050--Hb_151094_020 Hb_001006_050--Hb_004116_090 Hb_147060_010 Hb_147060_010 Hb_001006_050--Hb_147060_010 Hb_005356_030--Hb_004116_090 Hb_005356_030--Hb_151094_020 Hb_005356_030--Hb_000002_150 Hb_003858_050 Hb_003858_050 Hb_004116_090--Hb_003858_050 Hb_004116_090--Hb_151094_020 Hb_151094_020--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_151094_020--Hb_010812_130 Hb_000438_030 Hb_000438_030 Hb_151094_020--Hb_000438_030 Hb_000679_280 Hb_000679_280 Hb_002498_290--Hb_000679_280 Hb_003549_010 Hb_003549_010 Hb_002498_290--Hb_003549_010 Hb_030736_030 Hb_030736_030 Hb_002498_290--Hb_030736_030 Hb_002498_290--Hb_151094_020 Hb_002498_290--Hb_001006_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.265608 0.231791 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.249768 0

CAGE analysis