Hb_135737_010

Information

Type -
Description -
Location Contig135737: 366-921
Sequence    

Annotation

kegg
ID pop:POPTR_0004s02760g
description hypothetical protein
nr
ID XP_006383976.1
description hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
swissprot
ID Q9ZR08
description G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 OS=Arabidopsis thaliana GN=At4g03230 PE=3 SV=3
trembl
ID U5GE08
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s02760g PE=4 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_135737_010 0.0 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
2 Hb_064396_020 0.045624769 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
3 Hb_077027_010 0.0488971265 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
4 Hb_000111_060 0.0537495904 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
5 Hb_000392_500 0.0556204696 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010288_010 0.0677400595 - - Beta-glucosidase, putative [Ricinus communis]
7 Hb_064445_040 0.0686301493 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
8 Hb_000007_190 0.0769587374 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 10-like [Jatropha curcas]
9 Hb_026317_040 0.0856506317 - - hypothetical protein POPTR_0009s12270g [Populus trichocarpa]
10 Hb_112765_010 0.0894027672 - - conserved hypothetical protein [Ricinus communis]
11 Hb_152868_020 0.092235582 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
12 Hb_050514_030 0.0951872462 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
13 Hb_094439_040 0.0957858604 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
14 Hb_010166_010 0.0966801787 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
15 Hb_000416_020 0.0973515617 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000557_080 0.0980305505 - - conserved hypothetical protein [Ricinus communis]
17 Hb_103225_040 0.0997166075 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
18 Hb_000347_060 0.1002434817 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
19 Hb_001289_040 0.1012331697 - - NDR1/HIN1-like 1 [Theobroma cacao]
20 Hb_001935_060 0.1051580786 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_135737_010 Hb_135737_010 Hb_064396_020 Hb_064396_020 Hb_135737_010--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_135737_010--Hb_077027_010 Hb_000111_060 Hb_000111_060 Hb_135737_010--Hb_000111_060 Hb_000392_500 Hb_000392_500 Hb_135737_010--Hb_000392_500 Hb_010288_010 Hb_010288_010 Hb_135737_010--Hb_010288_010 Hb_064445_040 Hb_064445_040 Hb_135737_010--Hb_064445_040 Hb_064396_020--Hb_077027_010 Hb_094439_040 Hb_094439_040 Hb_064396_020--Hb_094439_040 Hb_000557_080 Hb_000557_080 Hb_064396_020--Hb_000557_080 Hb_001289_040 Hb_001289_040 Hb_064396_020--Hb_001289_040 Hb_064396_020--Hb_000392_500 Hb_077027_010--Hb_094439_040 Hb_077027_010--Hb_001289_040 Hb_077027_010--Hb_000557_080 Hb_077027_010--Hb_000392_500 Hb_112765_010 Hb_112765_010 Hb_000111_060--Hb_112765_010 Hb_003972_070 Hb_003972_070 Hb_000111_060--Hb_003972_070 Hb_010488_050 Hb_010488_050 Hb_000111_060--Hb_010488_050 Hb_026317_040 Hb_026317_040 Hb_000111_060--Hb_026317_040 Hb_000111_060--Hb_064396_020 Hb_000007_190 Hb_000007_190 Hb_000392_500--Hb_000007_190 Hb_000392_500--Hb_064445_040 Hb_000392_500--Hb_010288_010 Hb_103225_040 Hb_103225_040 Hb_000392_500--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_000392_500--Hb_152868_020 Hb_010288_010--Hb_000007_190 Hb_010288_010--Hb_064445_040 Hb_050514_030 Hb_050514_030 Hb_010288_010--Hb_050514_030 Hb_000347_060 Hb_000347_060 Hb_010288_010--Hb_000347_060 Hb_064445_040--Hb_000007_190 Hb_006634_120 Hb_006634_120 Hb_064445_040--Hb_006634_120 Hb_064445_040--Hb_103225_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.211952 2.66386 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.03019

CAGE analysis