Hb_136027_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig136027: 73-1050
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136027_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_003582_020 0.1016468992 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Eucalyptus grandis]
3 Hb_016404_010 0.1047189257 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_035391_010 0.1062641756 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_009247_020 0.1167444966 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
6 Hb_001846_040 0.1229085281 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000796_200 0.1280298538 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
8 Hb_002311_490 0.1282266779 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
9 Hb_000506_140 0.1302757454 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
10 Hb_012423_020 0.1369791406 - - hypothetical protein JCGZ_20730 [Jatropha curcas]
11 Hb_001411_150 0.1383046705 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
12 Hb_127628_010 0.1414988742 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_025477_020 0.1430214128 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
14 Hb_121913_010 0.1443956311 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_005568_060 0.1455010557 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
16 Hb_011287_020 0.1483155265 - - ATP binding protein, putative [Ricinus communis]
17 Hb_002922_010 0.150441242 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
18 Hb_019654_010 0.1520626799 - - multicopper oxidase, putative [Ricinus communis]
19 Hb_000210_150 0.1533782562 - - PREDICTED: protein YLS9-like [Jatropha curcas]
20 Hb_001289_030 0.1551240488 - - syntaxin, plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_136027_010 Hb_136027_010 Hb_003582_020 Hb_003582_020 Hb_136027_010--Hb_003582_020 Hb_016404_010 Hb_016404_010 Hb_136027_010--Hb_016404_010 Hb_035391_010 Hb_035391_010 Hb_136027_010--Hb_035391_010 Hb_009247_020 Hb_009247_020 Hb_136027_010--Hb_009247_020 Hb_001846_040 Hb_001846_040 Hb_136027_010--Hb_001846_040 Hb_000796_200 Hb_000796_200 Hb_136027_010--Hb_000796_200 Hb_001289_030 Hb_001289_030 Hb_003582_020--Hb_001289_030 Hb_025477_020 Hb_025477_020 Hb_003582_020--Hb_025477_020 Hb_002922_010 Hb_002922_010 Hb_003582_020--Hb_002922_010 Hb_003582_020--Hb_035391_010 Hb_001411_150 Hb_001411_150 Hb_003582_020--Hb_001411_150 Hb_000506_140 Hb_000506_140 Hb_016404_010--Hb_000506_140 Hb_005568_060 Hb_005568_060 Hb_016404_010--Hb_005568_060 Hb_016404_010--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_016404_010--Hb_002311_490 Hb_000465_330 Hb_000465_330 Hb_016404_010--Hb_000465_330 Hb_000210_150 Hb_000210_150 Hb_035391_010--Hb_000210_150 Hb_035391_010--Hb_025477_020 Hb_055706_010 Hb_055706_010 Hb_035391_010--Hb_055706_010 Hb_035391_010--Hb_002311_490 Hb_009247_020--Hb_005568_060 Hb_009189_010 Hb_009189_010 Hb_009247_020--Hb_009189_010 Hb_009247_020--Hb_001411_150 Hb_000563_460 Hb_000563_460 Hb_009247_020--Hb_000563_460 Hb_009247_020--Hb_016404_010 Hb_011287_020 Hb_011287_020 Hb_001846_040--Hb_011287_020 Hb_019654_010 Hb_019654_010 Hb_001846_040--Hb_019654_010 Hb_001846_040--Hb_005568_060 Hb_181824_010 Hb_181824_010 Hb_001846_040--Hb_181824_010 Hb_006483_050 Hb_006483_050 Hb_001846_040--Hb_006483_050 Hb_001846_040--Hb_035391_010 Hb_000796_200--Hb_000506_140 Hb_012423_020 Hb_012423_020 Hb_000796_200--Hb_012423_020 Hb_000796_200--Hb_011287_020 Hb_116349_090 Hb_116349_090 Hb_000796_200--Hb_116349_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.119408 11.2985 1.71693 2.22179 0.289105 0.185617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0521038 0 0 0.428699 0.0836962

CAGE analysis