Hb_136620_010

Information

Type -
Description -
Location Contig136620: 580-1151
Sequence    

Annotation

kegg
ID rcu:RCOM_1045970
description hypothetical protein
nr
ID XP_012092876.1
description PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
swissprot
ID Q9LYG9
description Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1
trembl
ID A0A067JL13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00023 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10112: 996-1148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136620_010 0.0 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
2 Hb_000206_080 0.024558805 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
3 Hb_003411_080 0.0768357444 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002028_230 0.1072122145 - - Pectinesterase-3 precursor, putative [Ricinus communis]
5 Hb_005854_060 0.1281247721 - - short-chain dehydrogenase, putative [Ricinus communis]
6 Hb_001433_120 0.1285558028 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
7 Hb_149407_010 0.128680417 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
8 Hb_008453_120 0.1297039792 transcription factor TF Family: bZIP hypothetical protein POPTR_0005s26480g [Populus trichocarpa]
9 Hb_005015_040 0.1299618646 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
10 Hb_162008_030 0.1306931256 - - cytochrome p450 [Ageratina adenophora]
11 Hb_000129_060 0.1346338003 - - PREDICTED: fatty acyl-CoA reductase 2-like isoform X1 [Populus euphratica]
12 Hb_029879_040 0.1347412824 - - PREDICTED: cytochrome P450 77A4-like [Jatropha curcas]
13 Hb_007157_050 0.1352644398 - - hypothetical protein RCOM_0711500 [Ricinus communis]
14 Hb_004019_130 0.1363980706 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
15 Hb_007218_010 0.1390571194 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X1 [Populus euphratica]
16 Hb_001680_060 0.141665157 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003147_020 0.1428429119 - - hypothetical protein POPTR_0019s07690g [Populus trichocarpa]
18 Hb_121680_010 0.1449160904 - - PREDICTED: uncharacterized protein LOC105644052 isoform X2 [Jatropha curcas]
19 Hb_078641_020 0.1461661306 - - Pectinesterase-2 precursor, putative [Ricinus communis]
20 Hb_162008_040 0.1483706446 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]

Gene co-expression network

sample Hb_136620_010 Hb_136620_010 Hb_000206_080 Hb_000206_080 Hb_136620_010--Hb_000206_080 Hb_003411_080 Hb_003411_080 Hb_136620_010--Hb_003411_080 Hb_002028_230 Hb_002028_230 Hb_136620_010--Hb_002028_230 Hb_005854_060 Hb_005854_060 Hb_136620_010--Hb_005854_060 Hb_001433_120 Hb_001433_120 Hb_136620_010--Hb_001433_120 Hb_149407_010 Hb_149407_010 Hb_136620_010--Hb_149407_010 Hb_000206_080--Hb_003411_080 Hb_000206_080--Hb_002028_230 Hb_000206_080--Hb_149407_010 Hb_162008_030 Hb_162008_030 Hb_000206_080--Hb_162008_030 Hb_000206_080--Hb_005854_060 Hb_003411_080--Hb_002028_230 Hb_003411_080--Hb_149407_010 Hb_003411_080--Hb_162008_030 Hb_000129_060 Hb_000129_060 Hb_003411_080--Hb_000129_060 Hb_029879_040 Hb_029879_040 Hb_003411_080--Hb_029879_040 Hb_002028_230--Hb_162008_030 Hb_002028_230--Hb_000129_060 Hb_004019_130 Hb_004019_130 Hb_002028_230--Hb_004019_130 Hb_002028_230--Hb_149407_010 Hb_002028_230--Hb_029879_040 Hb_001680_060 Hb_001680_060 Hb_005854_060--Hb_001680_060 Hb_021622_010 Hb_021622_010 Hb_005854_060--Hb_021622_010 Hb_162008_040 Hb_162008_040 Hb_005854_060--Hb_162008_040 Hb_007218_010 Hb_007218_010 Hb_005854_060--Hb_007218_010 Hb_000212_170 Hb_000212_170 Hb_005854_060--Hb_000212_170 Hb_012573_060 Hb_012573_060 Hb_005854_060--Hb_012573_060 Hb_000165_270 Hb_000165_270 Hb_001433_120--Hb_000165_270 Hb_001433_120--Hb_007218_010 Hb_001433_120--Hb_005854_060 Hb_007157_050 Hb_007157_050 Hb_001433_120--Hb_007157_050 Hb_001433_120--Hb_001680_060 Hb_002447_060 Hb_002447_060 Hb_001433_120--Hb_002447_060 Hb_149407_010--Hb_162008_030 Hb_149407_010--Hb_029879_040 Hb_149407_010--Hb_000129_060 Hb_149407_010--Hb_004019_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.102097 2.94898 0.0691769 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis