Hb_136850_040

Information

Type -
Description -
Location Contig136850: 17921-22106
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136850_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_003228_070 0.1342880093 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000173_200 0.1361481791 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000184_080 0.2361091141 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
5 Hb_003939_020 0.2602783702 - - PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
6 Hb_009773_040 0.2651884082 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000336_300 0.2792591389 - - -
8 Hb_000016_010 0.2813459821 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_008424_010 0.2815153791 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_001081_040 0.2841994139 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
11 Hb_007333_020 0.2843815752 - - -
12 Hb_004607_100 0.2846852698 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
13 Hb_070745_010 0.2847967811 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
14 Hb_005432_050 0.2877866381 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
15 Hb_002345_080 0.2900428045 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_000994_010 0.2936383114 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
17 Hb_001066_020 0.2938898086 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
18 Hb_133862_010 0.2990057281 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
19 Hb_135941_010 0.3001764775 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
20 Hb_000836_590 0.300746851 - - hypothetical protein JCGZ_14318 [Jatropha curcas]

Gene co-expression network

sample Hb_136850_040 Hb_136850_040 Hb_003228_070 Hb_003228_070 Hb_136850_040--Hb_003228_070 Hb_000173_200 Hb_000173_200 Hb_136850_040--Hb_000173_200 Hb_000184_080 Hb_000184_080 Hb_136850_040--Hb_000184_080 Hb_003939_020 Hb_003939_020 Hb_136850_040--Hb_003939_020 Hb_009773_040 Hb_009773_040 Hb_136850_040--Hb_009773_040 Hb_000336_300 Hb_000336_300 Hb_136850_040--Hb_000336_300 Hb_003228_070--Hb_000173_200 Hb_004607_100 Hb_004607_100 Hb_003228_070--Hb_004607_100 Hb_002345_080 Hb_002345_080 Hb_003228_070--Hb_002345_080 Hb_003228_070--Hb_003939_020 Hb_000836_590 Hb_000836_590 Hb_003228_070--Hb_000836_590 Hb_000173_200--Hb_000836_590 Hb_001373_120 Hb_001373_120 Hb_000173_200--Hb_001373_120 Hb_003766_030 Hb_003766_030 Hb_000173_200--Hb_003766_030 Hb_008637_010 Hb_008637_010 Hb_000173_200--Hb_008637_010 Hb_000438_040 Hb_000438_040 Hb_000184_080--Hb_000438_040 Hb_004041_070 Hb_004041_070 Hb_000184_080--Hb_004041_070 Hb_000389_250 Hb_000389_250 Hb_000184_080--Hb_000389_250 Hb_000111_220 Hb_000111_220 Hb_000184_080--Hb_000111_220 Hb_003793_020 Hb_003793_020 Hb_000184_080--Hb_003793_020 Hb_003939_020--Hb_009773_040 Hb_003939_020--Hb_000836_590 Hb_002374_330 Hb_002374_330 Hb_003939_020--Hb_002374_330 Hb_158803_020 Hb_158803_020 Hb_003939_020--Hb_158803_020 Hb_181810_010 Hb_181810_010 Hb_003939_020--Hb_181810_010 Hb_009773_040--Hb_181810_010 Hb_005568_060 Hb_005568_060 Hb_009773_040--Hb_005568_060 Hb_016404_010 Hb_016404_010 Hb_009773_040--Hb_016404_010 Hb_012423_020 Hb_012423_020 Hb_009773_040--Hb_012423_020 Hb_136027_010 Hb_136027_010 Hb_009773_040--Hb_136027_010 Hb_001081_040 Hb_001081_040 Hb_000336_300--Hb_001081_040 Hb_000016_010 Hb_000016_010 Hb_000336_300--Hb_000016_010 Hb_008424_010 Hb_008424_010 Hb_000336_300--Hb_008424_010 Hb_000994_010 Hb_000994_010 Hb_000336_300--Hb_000994_010 Hb_005432_050 Hb_005432_050 Hb_000336_300--Hb_005432_050 Hb_001066_020 Hb_001066_020 Hb_000336_300--Hb_001066_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0161989 0.0036418 0 0.00492938 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis