Hb_136856_010

Information

Type -
Description -
Location Contig136856: 174-1202
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID XP_011659859.1
description PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A5BID8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015625 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136856_010 0.0 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
2 Hb_021068_020 0.0179906313 - - -
3 Hb_009066_010 0.0388479136 - - -
4 Hb_089491_010 0.0395333015 - - -
5 Hb_009268_110 0.0414422168 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
6 Hb_068347_020 0.0439427798 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_027394_010 0.0439640687 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
8 Hb_013727_010 0.0900079652 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
9 Hb_013205_010 0.1209215325 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
10 Hb_005542_020 0.1351740822 - - lupus la ribonucleoprotein, putative [Ricinus communis]
11 Hb_010399_020 0.1530925854 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
12 Hb_076583_010 0.1558566377 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
13 Hb_008151_030 0.1569632616 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_105480_010 0.1585783543 - - -
15 Hb_034667_010 0.1634058721 - - -
16 Hb_000260_190 0.1675249711 - - -
17 Hb_002400_450 0.1699426796 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
18 Hb_111332_010 0.1720839019 - - Dihydroneopterin aldolase [Morus notabilis]
19 Hb_003400_030 0.1746200032 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
20 Hb_000944_010 0.1747172249 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]

Gene co-expression network

sample Hb_136856_010 Hb_136856_010 Hb_021068_020 Hb_021068_020 Hb_136856_010--Hb_021068_020 Hb_009066_010 Hb_009066_010 Hb_136856_010--Hb_009066_010 Hb_089491_010 Hb_089491_010 Hb_136856_010--Hb_089491_010 Hb_009268_110 Hb_009268_110 Hb_136856_010--Hb_009268_110 Hb_068347_020 Hb_068347_020 Hb_136856_010--Hb_068347_020 Hb_027394_010 Hb_027394_010 Hb_136856_010--Hb_027394_010 Hb_021068_020--Hb_009066_010 Hb_021068_020--Hb_068347_020 Hb_021068_020--Hb_027394_010 Hb_021068_020--Hb_089491_010 Hb_021068_020--Hb_009268_110 Hb_009066_010--Hb_068347_020 Hb_009066_010--Hb_027394_010 Hb_009066_010--Hb_089491_010 Hb_009066_010--Hb_009268_110 Hb_089491_010--Hb_009268_110 Hb_013727_010 Hb_013727_010 Hb_089491_010--Hb_013727_010 Hb_089491_010--Hb_068347_020 Hb_009268_110--Hb_013727_010 Hb_009268_110--Hb_068347_020 Hb_068347_020--Hb_027394_010 Hb_013205_010 Hb_013205_010 Hb_068347_020--Hb_013205_010 Hb_027394_010--Hb_013205_010 Hb_027394_010--Hb_089491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0214311 0.0467754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis