Hb_136872_010

Information

Type -
Description -
Location Contig136872: 220-423
Sequence    

Annotation

kegg
ID rcu:RCOM_1486450
description serine/threonine-specific receptor protein kinase, putative
nr
ID XP_002515906.1
description serine/threonine-specific receptor protein kinase, putative [Ricinus communis]
swissprot
ID C0LGG6
description Probable LRR receptor-like protein kinase At1g51890 OS=Arabidopsis thaliana GN=At1g51890 PE=2 SV=2
trembl
ID B9RQ87
description Serine/threonine-specific receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1486450 PE=4 SV=1
Gene Ontology
ID GO:0005576
description probable lrr receptor-like protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136872_010 0.0 - - serine/threonine-specific receptor protein kinase, putative [Ricinus communis]
2 Hb_022819_010 0.2908586732 - - Disease resistance protein RPS5, putative [Ricinus communis]
3 Hb_082960_020 0.2997795093 - - hypothetical protein B456_012G107300 [Gossypium raimondii]
4 Hb_033555_010 0.3093727019 - - -
5 Hb_000735_170 0.3111595787 - - hypothetical protein JCGZ_15146 [Jatropha curcas]
6 Hb_001652_070 0.333717872 - - PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
7 Hb_000076_170 0.3346805468 - - hypothetical protein JCGZ_00832 [Jatropha curcas]
8 Hb_003549_070 0.3391443625 - - -
9 Hb_182680_010 0.3420916583 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
10 Hb_001195_750 0.3421503376 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
11 Hb_002762_090 0.342403737 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_004894_010 0.3496077299 - - -
13 Hb_005392_100 0.3517964222 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
14 Hb_000544_100 0.3527168703 - - hypothetical protein JCGZ_03636 [Jatropha curcas]
15 Hb_008226_110 0.3569480882 - - uncharacterized protein LOC100501343 [Zea mays]
16 Hb_006971_080 0.3621686283 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
17 Hb_002267_120 0.3637892342 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
18 Hb_002639_010 0.3643348363 - - pseudouridylate synthase, putative [Ricinus communis]
19 Hb_147355_030 0.366231462 - - PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
20 Hb_007718_020 0.370316438 - - PREDICTED: receptor-like protein 12 [Camelina sativa]

Gene co-expression network

sample Hb_136872_010 Hb_136872_010 Hb_022819_010 Hb_022819_010 Hb_136872_010--Hb_022819_010 Hb_082960_020 Hb_082960_020 Hb_136872_010--Hb_082960_020 Hb_033555_010 Hb_033555_010 Hb_136872_010--Hb_033555_010 Hb_000735_170 Hb_000735_170 Hb_136872_010--Hb_000735_170 Hb_001652_070 Hb_001652_070 Hb_136872_010--Hb_001652_070 Hb_000076_170 Hb_000076_170 Hb_136872_010--Hb_000076_170 Hb_182680_010 Hb_182680_010 Hb_022819_010--Hb_182680_010 Hb_002762_090 Hb_002762_090 Hb_022819_010--Hb_002762_090 Hb_002639_010 Hb_002639_010 Hb_022819_010--Hb_002639_010 Hb_000544_100 Hb_000544_100 Hb_022819_010--Hb_000544_100 Hb_004894_010 Hb_004894_010 Hb_022819_010--Hb_004894_010 Hb_096811_010 Hb_096811_010 Hb_022819_010--Hb_096811_010 Hb_002267_120 Hb_002267_120 Hb_082960_020--Hb_002267_120 Hb_006971_080 Hb_006971_080 Hb_082960_020--Hb_006971_080 Hb_113803_010 Hb_113803_010 Hb_082960_020--Hb_113803_010 Hb_147355_030 Hb_147355_030 Hb_082960_020--Hb_147355_030 Hb_008226_110 Hb_008226_110 Hb_082960_020--Hb_008226_110 Hb_003455_010 Hb_003455_010 Hb_082960_020--Hb_003455_010 Hb_000098_200 Hb_000098_200 Hb_033555_010--Hb_000098_200 Hb_169586_010 Hb_169586_010 Hb_033555_010--Hb_169586_010 Hb_007718_020 Hb_007718_020 Hb_033555_010--Hb_007718_020 Hb_002477_040 Hb_002477_040 Hb_033555_010--Hb_002477_040 Hb_033555_010--Hb_000735_170 Hb_004602_020 Hb_004602_020 Hb_033555_010--Hb_004602_020 Hb_000940_170 Hb_000940_170 Hb_000735_170--Hb_000940_170 Hb_000130_070 Hb_000130_070 Hb_000735_170--Hb_000130_070 Hb_001631_100 Hb_001631_100 Hb_000735_170--Hb_001631_100 Hb_000735_170--Hb_182680_010 Hb_002477_220 Hb_002477_220 Hb_000735_170--Hb_002477_220 Hb_001652_070--Hb_002639_010 Hb_002255_080 Hb_002255_080 Hb_001652_070--Hb_002255_080 Hb_001341_190 Hb_001341_190 Hb_001652_070--Hb_001341_190 Hb_002456_020 Hb_002456_020 Hb_001652_070--Hb_002456_020 Hb_000117_150 Hb_000117_150 Hb_001652_070--Hb_000117_150 Hb_001652_070--Hb_022819_010 Hb_002188_020 Hb_002188_020 Hb_000076_170--Hb_002188_020 Hb_011928_010 Hb_011928_010 Hb_000076_170--Hb_011928_010 Hb_003117_050 Hb_003117_050 Hb_000076_170--Hb_003117_050 Hb_001524_100 Hb_001524_100 Hb_000076_170--Hb_001524_100 Hb_004266_010 Hb_004266_010 Hb_000076_170--Hb_004266_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 3.61927 2.20558 2.78314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.08164 0 9.54768 1.22487

CAGE analysis